Pelosinus fermentans: JBW_01941
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Entry
JBW_01941 CDS
T03813
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pft
Pelosinus fermentans
Pathway
pft03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JBW_01941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pft03400
]
JBW_01941
Enzymes [BR:
pft01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JBW_01941
DNA repair and recombination proteins [BR:
pft03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JBW_01941
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJQ27291
UniProt:
I9NVF3
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All DBs
Position
complement(2246337..2247266)
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AA seq
309 aa
AA seq
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MPNQTVMEINKLNVALSNLDKVFYTASNFTKAQVIDYYIRIAPVLLPHLTGRPLTLKRYP
NGATAKFFYQKECPSFRPNWLSTVPVWSESKKRSINFCLAQDLPSLIWAVNLAAIELHTS
LSRSEDILRPTMLVFDLDPGHPATIVHCAEVALTLHRILLESNLKSFPKTSGSKGIQVYI
PLNTRTITYTQTKEFAHTLAKILEQQNPSLVVSKMKKDLRKGKIFIDWSQNDDHKTTVCV
YSLRAKKYPTVSTPVTWEEVEAAYLQQAPDLLSFTTDQVLERVQTMGDLFAPVLELQQTL
PNLKIKKMV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatcagactgtcatggaaattaacaaactgaatgtagcgctttccaacttagac
aaagttttttatactgccagtaattttacaaaggcacaagtaattgactactatatccgt
attgcacctgttttacttccccaccttacaggtcgcccacttactcttaagcgttaccct
aatggtgcaacagcaaagtttttttatcaaaaagaatgcccatccttccgccccaattgg
ttatcaaccgtaccggtgtggagtgaaagcaagaaacgcagcatcaatttttgtctcgcc
caagatctgccatcactgatctgggctgtcaatttagctgccattgaacttcatacttcc
ttatcacgctctgaagatatactccgacctaccatgttagtctttgacctcgatcctggt
cacccagcaacaattgtacattgcgctgaggtagctcttacactacatagaattttatta
gagagcaaccttaaaagctttcctaaaacatctggttcaaaaggcatccaagtctatata
cctcttaatacacggacgataacctatacccaaactaaagaatttgcccatacactcgca
aaaatattagaacaacagaatccttcccttgtcgtatctaaaatgaaaaaagatttacgc
aaaggaaaaatttttatagactggagccaaaatgacgatcataaaacgacggtttgtgtc
tattctctacgagcaaaaaagtaccctaccgtatctactccagtgacttgggaagaagta
gaagcagcgtatctacaacaagctcctgatctactctctttcactaccgatcaagtatta
gaaagagttcagacaatgggggacttgtttgcacctgttcttgagcttcagcagacacta
ccgaacctcaagatcaagaaaatggtctga
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