Pyrococcus furiosus DSM 3638: PF1564
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Entry
PF1564 CDS
T00075
Name
(GenBank) DNA-directed RNA polymerase subunit b
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
pfu
Pyrococcus furiosus DSM 3638
Pathway
pfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PF1564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfu03021
]
PF1564
Enzymes [BR:
pfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PF1564
Transcription machinery [BR:
pfu03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
PF1564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Auto_anti-p27
RUBY_RBDX
NOB1_Zn_bind
OrfB_Zn_ribbon
RNA_pol_Rpb2_45
Zn_Tnp_IS91
Motif
Other DBs
NCBI-ProteinID:
AAL81688
UniProt:
Q8U0M3
Structure
PDB
LinkDB
All DBs
Position
complement(1459639..1462992)
Genome browser
AA seq
1117 aa
AA seq
DB search
MRGPTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDF
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRI
GELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
DERQEKYIAKVFSYRHGYRALVAVERRKDGILYVDIPNVPKPVKFVYVMRALGLERDKDI
VEAVGNDPEVQQIMFDNLEDASDITTQQEALEFIGKLVAPGQAREYRLKRAEYVIDNNLL
PHMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLLKDLFRVAF
SQLVKDIQYQMTKTYQRKGDKYTFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
SQLLDRTNYMSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
ALMAQITTAVPEEEIREYLMSLGIVPIEVRRPDPTLWRVYLNGVLIGTIEDGKALVQRIR
QDRRSGKISDVINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAVKEGRLK
WSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAA
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
VAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGY
RGEKYYRNLDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQERRETSVAVRPS
EKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTES
GIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGF
KHTGREIMYDGITGKRLEADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRRRVYCPVC
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLSERV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtccgactgttgtagatgttactcccgacgatctttggattgtaatggagagc
tattggcaagagaaagggcttgtgagacagcatcttgactcatacaatgcctttattgag
agaggacttcaagaggtggtaaatgagtttggtggaataaagccggatattccagacttt
gaagtaaagttcggtaagattagagtaggagaacccgagtttcaagaacctcatggtcaa
agaaagcccctttatccaatggatgcaagaataagaaacctaacctacgccgcaccactc
tacctagaaatgattccagttataaaaggagttgagcaagatccagtagaggttagaatt
ggagaacttccaataatgctaaaatctaaagtttgtaggctgtacggacttagcgatgaa
gaattaataaagcttggagaggatcccaaggatccaggtggttacttcataatcaacggt
tctgaaagagttatagtctctattgaagacatagctcccaataggactttggtagagaag
gacgaaaggcaagaaaagtacatagcaaaggtcttttcttatagacatgggtatagggct
ttagttgctgttgagagaagaaaggatggaattctttacgttgatatacctaacgtacct
aagcctgttaaattcgtttatgtgatgagagctcttgggctggagagagataaggatatc
gttgaggcagtaggtaatgatccagaagttcaacaaattatgtttgataaccttgaggat
gccagcgatataactacccaacaagaggctcttgaattcataggtaagcttgtagctcct
gggcaggccagagaatacagacttaagagggcagaatatgtaattgataacaacttgttg
cctcacatgggtgtttctccagaggatagaataaagaaggcttactacctgggaatgatg
gctcttaaggtcatcgagctctccctcggaagaagacctgaagatgacaaagatcattat
gcaaataagaggctaaggctggctggagatcttctaaaggacttgttccgtgtagcattt
tctcaacttgttaaagacatacaatatcaaatgaccaagacataccaaagaaaaggggac
aaatatacttttggaaacatccatagatttattaggaactccataaggccagacgttctc
accgagagaattgaacatgctcttgcaactggagcttggcctggtgggagaacgggtgtc
agtcagttgctagatagaactaactacatgtctacattatcccaccttagaagagtcacg
tctccactagacagagaacagccccacttcgaggctagagaccttcacggaactcactgg
ggaagaatttgtccaacggagactcctgaaggtccaaactgtggtcttgtgaagaattta
gcattgatggctcaaataacaacagccgttcctgaagaggagattagggagtacttaatg
tctttgggaatagttccaattgaagttagaagaccagatccaacattgtggagagtttac
cttaatggtgtcctcatcggaacaatagaggatggaaaagctttagttcagagaattagg
caagacagaagaagtggaaagatcagcgatgttatcaatgtggcatactatgaggacgtt
aaagaagtctacgttaacagcgacgatggtagggttagaaggcctctaatcattgttgaa
aatggcgttcctaaactaactaaagagcatgttcaagcagttaaagaaggaaggctcaag
tggagtgacttaattaaaatgggaattatcgaataccttgacgcagaagaggaggaaaac
gcatatgttgcaatgtggccctgggaagttactgaagagcacactcacttagaattaatg
cctgcagccattcttggcctaccggcttcccttgttccctatcctgaacacaacgcagct
ccaagaaacacgtatggagcaggtatggccaagcagagccttggacttggatgggcaaac
tttagaattagggtagatactagaggtcacttacttcattatccacagattccactggtg
aactcaagaataatgaaagcagtaggatatgaggataggcctgctggtcagaacttcgtg
gttgcagtcttggcttaccaaggttataacatggaggatgctatcataataaacaaggcc
tccatagagagaggactcgccagatcaactttcttcagaacgtatgaagctgaggagaag
aaataccttggaggtcagactgacaagtttgaaattccggatcctactgtaagaggttac
agaggagaaaagtactatagaaaccttgatgaagatggtctcatattcccagaatcaaaa
gtcgaggggaaggacgttttagtaggaagaacttctccaccaaggttccttgaagagaga
ggtcttggaactgtgtctcttcaggagagaagagagactagtgtggctgtaaggccgagt
gagaagggagttgttgataaagtaataataaccgagacgggagatggaactaagttagtt
aaggttactgtgagagacttgagaatcccagaactcggagacaaattcgcttcaagacat
gggcagaaaggtgtcattggacttattgtgccccaggaggacatgccttggaccgagagt
ggaattgtacccgatctcatagttaatccacacggtataccatcaagaatgaccgtgggt
cagctaattgaagctataggtggtaaggttgcttcacttaagggaaggagagttgatgga
acagcatttatcggagaaccagaagagaagctaagaaaagagctagaagagcttggattc
aagcatacgggtagagaaataatgtatgatggtataacagggaagagattagaggctgat
atattcattggtgtgatctactatcagaggctccaccacatggttgcagataagatacat
gcacgttcaagaggtcctgtccaagttctaactaagcaaccgacggaaggtagagcaaga
gagggtggtctaagatttggagaaatggagagagacgttcttgttggccatggagctgcc
atgttactaatagagcgtttacttgaggagagcgataagactgaagtatgggtatgtgag
aactgtggacacatagcactagaggacaagagaagaagaagagtctactgtcctgtttgt
ggagaagaagaaagaattagcaaagtagagatgagctacgcgttcaaattgttgcttgat
gagttgaaggccatggttattagacctaagttaaacctctcagagagggtgtga
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