Pseudomonas fulva: Psefu_0334
Help
Entry
Psefu_0334 CDS
T01501
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psefu_0334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfv03019
]
Psefu_0334
Enzymes [BR:
pfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psefu_0334
Messenger RNA biogenesis [BR:
pfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psefu_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEF20318
UniProt:
F6AFY0
LinkDB
All DBs
Position
complement(375325..377172)
Genome browser
AA seq
615 aa
AA seq
DB search
MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLASKLLHDPERIEVTPPNTTVERIEQRVFRLQASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASKVEAERPEVREPQKPRQPRGAKAEGERQNGGRRDKGK
DGGKAKSQPQAKAKPARGQQPRGQARPAPAAGAPALPPDRAPDEFRDDDIDNFGNRVDYV
PTQNKPQGRGRRQGGGQNAGGAGQAPRGQGKGPRTGGGGSANGGKRQGQGQGGGRSRGGD
NRSRGARDNVVTSLNRDELPRREGPRRDAPEKQPIIMHKASRSDRLPTAEQLDQLPSSRP
RGEKPALLTRNRDSE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctttggtccgcgcggtcgaagccgccggc
tacacccagcccactccggtgcaacagcgggccatccccgccgcgttgcaaggtcgcgac
ctgatggtggcagcccagacgggtacaggtaaaaccggcggcttcgccctgccgatcctc
gagcggctgttccccaacggccatccggatcgcgaacagcgccacggcccgaagcagccc
cgcgtgctggtgctcacccccacccgcgaactggccgcccaggtgcatgacagcttcaag
ctgtatgcccgcgatctgaaattcgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggtgcaggccctggccaagggcgtcgacgttctggtcgcttgcccgggccgcctg
ctcgacctggccgggcaaggcagcgtcgacctgtcccacgtggaaattctcgtgctggac
gaagccgaccgcatgctcgatatgggcttcatccacgatgtgaagaaggtcctcgcccgc
ctgccggccaagcgtcagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccagcaagctgctgcacgaccccgagcgcatcgaggttacgccgccgaataccacg
gtcgagcgcatcgaacagcgcgtattccgcctgcaggccagccacaagcgcgccctgctc
gctcacctgatcaccgccggtgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgaccgctgccgcgattcac
ggtaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggcgaacaaggtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagctgccccac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtgcaccgcatcggccgtacc
ggtcgtgccggtcgtagcggcgaagccatctccctggtcgccccggacgaggagaagctg
ctcaagagcatcgagcgcatgaccaagcagaagatcccggacggcgatctgatgggcttc
gatgccagcaaggtcgaggccgagcgcccggaagtacgcgagccgcagaagccacgccag
ccgcgcggcgccaaggccgaaggcgagcgccagaatggcggccgtcgcgacaagggcaag
gatggcggcaaggccaagagccagccccaggccaaagccaagccggcccgcggtcagcag
ccacgtggccaggcacgcccagcaccggctgcaggcgctcccgccctgccaccggatcgc
gcgccggacgaattccgcgatgacgatatcgacaacttcggcaaccgcgtcgactacgtg
ccgacccagaacaaaccgcaaggccgtggccgtcgccagggcggcggtcagaatgctggc
ggcgccggtcaggcaccgcgcggtcagggcaagggcccacgcaccggcggtggtggcagc
gccaatggcggcaaacgtcagggccagggtcagggcggcggtcgtagccgtggcggcgac
aaccgcagccgtggcgcgcgtgacaacgtcgtcacgtcgctgaaccgcgacgagctgcca
cgccgtgagggcccacgtcgcgacgcccccgagaagcagccgatcatcatgcacaaggct
tcgcgcagcgaccgtctgccgaccgccgaacagctcgatcagttgccgagcagccgcccg
cgtggtgaaaagcccgctctgctgacccgcaaccgcgacagcgagtaa
DBGET
integrated database retrieval system
