Pseudomonas simiae PCL1751: PF1751_v1c25520
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Entry
PF1751_v1c25520 CDS
T03766
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PF1751_v1c25520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c25520 (ligD)
Enzymes [BR:
pfw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PF1751_v1c25520 (ligD)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PF1751_v1c25520 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJP52252
LinkDB
All DBs
Position
complement(2861792..2864251)
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AA seq
819 aa
AA seq
DB search
MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN
SVLSDASVGKPKTRAKARKTALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAG
EVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNALDIGRS
LDIVYYLFDAPFLNGEDQRQAPVEERRAALKEALAGSRSTLLRYSEAFTAHHRDIFESAC
DLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNND
TGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQF
AEWTREGVVRQAAFVGLRTDKPVAQVVHEQPRTVHSRKPVKKTSRDVNITHPDRVIDKHS
GTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQS
LDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAML
EAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKAIAQFMTEQLPER
FTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWT
VANVLQRLNALKADPWAGYANRQKISKKMWDKLGAHPPE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcccttgagcgaatacaaccgcaaacgtgatttcgggataaccgccgaaccg
gcaggcagtgcgccagcaggcaaacgcaaagcctcggcgctgtcgtttgtgattcaaaag
catgacgcacgcaacctgcactatgacttccgcctggagctcgacggcgtactgctcagt
tgggccgtccccaaaggcccgagcctggatcccagccacaagcgcctggccgtccacgtc
gaagatcatcccctgagctatggcggctttgaaggcagcattccagcgggtcagtacggt
gcaggcgatgtcatcgtgtgggaccgcggcatctggcagccccacgatgagccccgcaag
gcctacgcagccggcaagctcaaattcaccctggtcggcgagaagctctccggtgactgg
gcgctggtgcgcacgcgcttgaagggcagcggcgacaaggaacaatggctgctgatcaag
gaaaaggacccacaggcgcgctcggccgacgactacgatatcgtccaggcccagccgaac
agcgtgctcagcgatgcctcagtgggcaaacccaagacgcgggccaaggccaggaaaacc
gccctccccgagcaattcaccccacaattggccacactggtggatcgtgcacccgagggc
gattggcaatacgaaatcaagttcgacggttaccgcatgctcgcacgtatccaagcgggt
gaagtgcgcctgttcacccgcaacgggcacgactggaccgagcgtctgccgcgtcaggtc
aaggccttgcaggcactgaagctcaaggacagctggctggatggtgaggtggtcagcctc
aatggcgacggcctgccggactttcaggcgctgcaaaatgccttagatatcggccgcagc
ctggacattgtctactacttgtttgacgcgccctttctcaatggcgaggaccaacgccag
gcgccggtcgaggaacgccgcgccgccctaaaggaggctctggccggtagccgcagcaca
ttgctgcgctattccgaagcgtttaccgcgcaccaccgggacatctttgaaagcgcctgc
gacttggccctcgaaggcgtgatcggtaagcgcctgggcagcccgtacgtttcccgtcga
agtgccgactggatcaaactcaaatgccggctgtcccaggaattcgtgatcgtcggttac
acccggccacagggttcacgcagtggcttcggcgcgctgttgctggcggtgaataacgac
acgggcctggtgtacgcgggccgtgtgggaacgggtttcgatcaggcggcgctgaaagcc
atttacgcgcagctcacaccgctggagtgcgagacgtcacccctggcgaagccactgtcc
agcgcccaagcgcgtggtgtgcattgggtcaaaccgacgttggtcgcgcaggtgcagttt
gccgagtggacacgcgaaggcgtggtccgccaggcagcgtttgtcgggctgcgcaccgac
aagccggtggcgcaggttgttcatgagcaaccacgcacggtccactcaaggaagccggtg
aaaaaaaccagtcgcgatgtgaacatcacccacccagaccgtgtgatcgataaacacagc
ggcacacaaaaacagcaactcgcgcaattctacgacaccatcagccaatggattctgccc
ttcctgcgccatcgtcctgtctcactgctgagagcgcccgagggtatcgaaggcgagcaa
ttcttccagaaacactcggagcgcctggccattcccaacatcaagcaattggatcagtct
ctcgatcctggccatgcacgcctgatggaaatcgacaacgtcggcgcattgatcggcgca
gtacaaatgggcagcgtggagtttcacacctggggcgccacctcggacaagatcgaaacc
ccggacctgtttgtgctcgatctcgacccggacccggcactgccctggaaagccatgctg
gaggccgcgcaactcaccctgtcggttttggatgagctggggttgcaagccttcgtcaaa
accagcggcggcaagggcctgcacctgatcgtgccgttggcgcgccgagacaattgggag
accgtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcagttgcccgaacgt
tttaccgcgacatcgggccccaaaaaccgggtcggcaagatctttatcgattacctgcgc
aatgcccgcggtgccagcaccgtagcggcgtattccgtgcgcgcacggcctggcttgcca
gtgtcggtaccggtcagccgcgaggagttggaggggttacgcggtgcgcaacaatggacc
gtcgccaatgtgctgcagcgcttgaacgctttgaaagcggacccctgggcggggtatgcc
aatcgccagaagatcagcaagaagatgtgggacaaactgggcgcccatccaccggaatga
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