Pseudomonas simiae PCL1751: PF1751_v1c50540
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Entry
PF1751_v1c50540 CDS
T03766
Name
(GenBank) ECF subfamily RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PF1751_v1c50540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfw03021
]
PF1751_v1c50540
Transcription machinery [BR:
pfw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PF1751_v1c50540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
HTH_24
HTH_17
Sigma70_r3
Sigma70_ECF
MerR
Peripla_BP_3
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AJP54746
LinkDB
All DBs
Position
5603229..5603747
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AA seq
172 aa
AA seq
DB search
MSSIQNPHSELVGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREP
RAFLMAIAKGLLFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGEPQ
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtcgattcagaacccacacagtgagcttgttggcgcgttgtatcgcgaccatcgt
ggctggctgctggcctggcttcgacgcaacgtggcctgcccgagccgcgccgaagacctg
agccaggacaccttcatgcgtctgctgggccgtgacgagttgcgcgcgccccgcgaaccc
cgtgcgttcctgatggcgatcgccaagggcttgctgttcgattacttccgtcgcgccgcc
ctggaacaggcctacctcaccgaactgatgctgatcccggaaagtgaacacccttcgccg
gaagaacagcacctgatcctcgaagacctcaaggctatcgaccgcctgctcggcaagctg
tcgagcaaggcccgcgccgccttcctttataaccgtctcgacggcatcggccacgccgaa
atcgcccagcgcctcggcgtgtcggtgccccgcgtgcgccagtacctggcccaaggcatt
cgccagtgctacatcgcgctgtatggcgagccgcagtga
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