Pestalotiopsis fici: PFICI_06888
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Entry
PFICI_06888 CDS
T04924
Name
(RefSeq) Regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03013
Nucleocytoplasmic transport
pfy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PFICI_06888
03015 mRNA surveillance pathway
PFICI_06888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_06888
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PFICI_06888
5.6.2.5 RNA 5'-3' helicase
PFICI_06888
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PFICI_06888
mRNA cycle factors
Common to processing body (P body) and stress granule
PFICI_06888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
PIF1
AAA_22
nSTAND3
SRP54
AAA_5
ATPase
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
19271901
NCBI-ProteinID:
XP_007833660
UniProt:
W3X9N8
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MEGAFTHVGNHLISDSAAAINAGDDDLSALDHDESLLYGTKFAGRKGLGGLGNARRRDDD
DNGTEAAFDDDEISMASMPIGAMKDLAITRATPDEEKKLPAHACAYCGIHSPASVVKCLA
CNKWFCSARGTASSSHIVNHLVRARHKEVQLHPESTLGDTILECYNCGTKNVFLLGFIPA
KSDTVVVLLCRQPCAASTSTKDMSWDISRWQPLLEDRAFLPWLVTPPSDHEQLRARHLSA
PMIARLEEMWKDNASATIHDLEKAASIDDDPAPVLLKYEDPYQYQNIFGPLVKMESDYDR
KLKEAQSEDGLVVRWDKGLNDKHLASFTFPKLESGDVKLAVGDEMRLKYKGELRAPWEGV
GYVIKIPNNQSDEVTLELRKTGNDKSVPTECTHNFSADYVWKATSYDRMQAAMKQFAVDE
MSVSGYIFHKLLGHEVAVAPSKTQLPKKFSVPGLPELNGSQISAIKSVLSNPLSLIQGPP
GTGKTVTSATIIYHLAKMNSSQVLVCAPSNVAVDQLCERINLTGLKVVRLTAKSREDVES
SVSFLALHEQVRMLDSNPELVKLMQLKSEVGELGSNDEKKFKQLTRAAEREILGNADVVC
CTCVGAGDPRLAKMKFRNVLIDESTQSAEPECMIPLILGCKQVVLVGDHKQLGPVIMNKK
AAKAGLNQSLFERLVRLGLTPIRLNIQYRMHPCLSQFPSNMFYDGSLQNGVSAPSRIRKD
VDFPWPVAEMPMMFWSNLGNEEISASGTSYLNRTEATNVEKIVTRFFKAGVRPADIGVIT
PYEGQRSYIVNVMQNTGTFKKDSYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLS
DPRRLNVALTRAKYGLVIIGNPKVLSKHDLWHHLLVHFKEQKCLVEGALTNLQTSLLQFS
KPKNNFRQRPNQLGYVSGGYARDGQHHNSAMSVQDFDSGSMMSYIPDDVSSIHSSTLGGA
GLGNTAFPQMFSSFNPDQWPGLPGFNGPGGRLGGKRGARGAESVAGESVATSEYTDASAS
VIGGRGVGQGGASLGAGLHDALRSSRPASYSQSDRLKQYVESSGRPGYANGYGNRRFDDD
EKSISTAFASQIGGGFD
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccttcactcacgtcggcaaccacctgatctccgactctgctgccgccatc
aatgccggtgacgacgatctttccgcactcgaccacgatgagagtttattgtatggtacc
aagtttgcgggtcgcaaaggtctaggaggccttggcaacgccagacgccgcgacgatgat
gacaatggtaccgaagctgcgtttgatgatgatgagataagcatggcgagcatgcctatc
ggcgccatgaaggatctcgccatcaccagggctacacccgacgaggaaaagaagttgccc
gctcatgcctgcgcttattgcggaatccactcgcctgcctcagttgtcaagtgtcttgcg
tgcaataagtggttctgcagtgctcgcggcaccgccagctcctctcatattgttaaccat
ctcgtccgcgctcgacacaaggaggttcagcttcaccccgagtccaccctcggcgacact
attctcgaatgctacaactgcggtaccaagaatgtcttccttctcggttttattcctgcc
aagtccgacacggtcgttgttctactttgccgacagccctgtgccgcttcgacctccaca
aaggatatgagctgggacatttcgcgttggcaaccccttctcgaggaccgggcctttttg
ccttggcttgtcactcctccatccgatcacgaacagctccgcgcacgccacttgagtgca
cccatgatcgctagattggaggagatgtggaaggataatgcttcagccacaatccacgat
ctcgaaaaggcagccagtatcgatgacgatcccgccccggtcttgctcaagtacgaagac
ccttaccagtaccagaatatctttggccccctagtcaagatggaatcggactatgacaga
aagctgaaggaggcgcagtccgaagacggtctggtcgttcgatgggacaagggtcttaat
gacaagcatcttgctagctttacgttccccaaactcgagtctggcgatgtcaagctcgct
gtcggcgatgaaatgcgactcaagtacaagggcgagcttcgtgcgccttgggagggtgtt
ggctatgtgatcaagatccccaacaaccaatctgacgaagtcactctggaactgcgcaag
accggcaacgacaagagtgtgccgactgaatgcactcacaatttctctgcggattatgtc
tggaaggcgacctcctatgaccgcatgcaggctgccatgaagcagtttgcggttgatgag
atgagcgtatcgggatacattttccacaagttgcttggtcacgaggttgccgttgctccg
tcaaagactcaacttcccaaaaagttcagcgttccaggactgccagaactcaacggcagc
cagattagcgctatcaagagtgtcttgtcgaaccctctgagtctgatccagggacctccc
ggaacgggcaagactgtcacatcggctacaatcatctatcatctagctaaaatgaacagc
agccaggttctcgtctgcgccccgtcgaacgttgccgtcgatcagctttgcgaacgaatc
aatctgaccggacttaaagttgtgcgtctcacagctaaatctcgcgaggatgtcgagtct
tccgtgagcttccttgcacttcatgagcaagtccgaatgcttgacagcaacccagagttg
gtcaaactcatgcagctgaagtcagaagtcggtgaattgggaagcaacgatgagaagaag
ttcaagcagcttactcgcgctgctgaacgtgagattctcggcaatgctgatgtcgtttgt
tgcacttgtgttggtgctggtgacccacgcctcgcaaagatgaagtttcgcaacgtcttg
atcgacgaatctacccagtctgccgagccagagtgcatgatcccattgattctaggctgc
aagcaggttgtcctcgtgggtgaccacaagcagctgggccccgttattatgaacaagaaa
gctgccaaggccggtctcaaccagtcgctctttgagcgtctcgttcgccttggccttacg
ccaatacgtctgaacattcagtatcgaatgcatccctgtctatcccagtttccctccaac
atgttctatgacggctccctccagaatggtgtctctgcccctagccgaatccgtaaggac
gttgatttcccttggccagtcgcagaaatgccaatgatgttttggtccaacctcggcaac
gaagaaatctcagcctctggaacatcataccttaaccgaacggaggctaccaatgtcgaa
aagattgtcacccggttcttcaaagccggagtgcgtcctgcagatattggtgtcattacg
ccgtacgagggacaacggagctacattgtcaatgtcatgcagaacacgggcaccttcaag
aaggattcctacaaggaggttgaagttgcatctgtcgacgctttccagggtcgtgagaag
gatttcattgtcctatcgtgtgtgcgttccaacgataaccagggcattggtttcttgtcc
gacccacgtcgtctcaatgttgctcttactcgtgccaagtacggtcttgtcatcattggc
aaccccaaggttctctcgaagcacgacctgtggcaccacctccttgttcacttcaaggag
caaaagtgcttggtagaaggtgcactcaccaacctgcagacctctcttttgcaattcagc
aagcccaagaacaacttccgtcaacgtccaaaccaattgggttatgtttctggcggctat
gctcgtgatgggcagcaccataattctgccatgtccgttcaagacttcgactcgggatcc
atgatgtcgtacatccccgatgatgtttcaagcattcacagctcgactcttggtggcgcc
ggactcggaaatactgccttcccacaaatgttctcctcgttcaaccccgatcaatggccg
ggtttgcctgggttcaacggcccgggcggtcgtctgggaggtaagcgcggcgctcgcggc
gccgagagtgtggccggtgaaagcgttgctacctcagagtacacggatgccagtgcatct
gtcattggtggcagaggcgttggacaaggtggcgcgagcctcggcgctggacttcacgac
gcccttcgttcctcgcgacctgcttcctactcacagtccgatcgtcttaagcagtatgtc
gagagctctggccgcccaggttatgcgaatggatacggcaaccgtcgttttgacgacgac
gagaagagcattagcaccgccttcgcaagtcagattggtggcgggttcgactga
DBGET
integrated database retrieval system
