Pestalotiopsis fici: PFICI_10455
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Entry
PFICI_10455 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03022
Basal transcription factors
pfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFICI_10455
09124 Replication and repair
03420 Nucleotide excision repair
PFICI_10455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfy03021
]
PFICI_10455
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_10455
Transcription machinery [BR:
pfy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFICI_10455
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFICI_10455
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MdcG
Motif
Other DBs
NCBI-GeneID:
19275468
NCBI-ProteinID:
XP_007837227
UniProt:
W3WWY8
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MSANSLQLSEYLEKVQGTTFRRLYQQPSAAFAVFRRMLPHLAKTIVMALLYMPTPLSASD
LDIWVKPTSKRQKDQAISVLQSLHIIPKEASTISLTKNFKSSLRLALEGGGDHNSFGVPS
SLPVAPEIDVPYLDNWARQRWDSILHYVVNSVGISDGSRMTGDKTNGPNAAVKELLIGGR
LVERRSTSVHITQAGFTFLLQEANAQVWTLLLLWLEAAETNPRAGLDHVDMLSFLFLLAS
LELGRAYSTDALTESRRNMLPFLVDFGLVFIPRNDNKSFFPTRLATTLTSSESSLRSVSA
GFTAASEGMADSQDKNAVILETNFRIYAYTSSPLQIAVLALFCELKMRFRELVSGRLTRN
SIRRAVDMGITSDQIISYLATHAHEQMHRVAASSKKPLLPPVIVDQIRLWQLDTERMTAT
PGFLFMDFDSVKEYEQVRQFAETVGVLKWADDKKGMFFANKVEQIRDFMKNRRKDDQ
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaactctcttcagctctccgagtacctcgagaaggtgcaggggacgacattc
agacgtctctaccagcagccctcggccgcattcgcagtgttccggcgcatgctgccacat
ctggcaaagaccatcgtcatggccctcctgtacatgccgacgcccctctccgccagcgac
ctcgacatctgggtgaagccgacatcgaagaggcaaaaagaccaagccatatcggtgctt
cagtcacttcacattatcccgaaagaagcatcgaccatatccctcaccaagaatttcaag
agcagtctgcgcttggctctcgagggtggcggagatcacaactcctttggcgtcccctcc
tccctgcctgtcgcccccgagatcgatgtaccgtacctcgacaattgggctcgacagaga
tgggattcgatattgcactatgtcgtcaactccgtgggtatcagtgacggatcccgcatg
actggcgacaagacaaacggacccaacgcggcagtaaaggagctattgattgggggacgt
ctagtcgagcgaaggagcacgagcgtacacataacacaagctggcttcacattcctttta
caagaggcaaatgcacaagtctggacccttcttttgttgtggctcgaagccgccgaaaca
aatcccagggcaggtctggatcatgtcgacatgctgtccttcctcttcctgttggcctct
ctggagctcggtcgcgcgtacagcaccgatgcgctgacggagtcgcggcgaaacatgttg
cccttcttggtggatttcggtttagtgtttattccccgaaacgacaacaagtcattcttt
ccaacacgcctggctactacactcacgagtagcgagagcagtctccgcagcgtcagtgcg
ggattcacagctgccagcgaagggatggccgattcacaggacaagaatgccgtcatcctg
gagaccaactttagaatatacgcatacacctcatcgccgctccaaatcgccgtcttggcc
cttttctgcgagctgaaaatgcgcttcagagagctcgtctctggtcgcctcacccgcaac
tcgatccgccgggccgtagatatgggtatcacttcggaccaaattatttcgtacctagcc
acgcacgcacacgagcagatgcatcgtgtcgcagcatcgtccaagaagccccttttgcct
cccgttattgtagatcaaattcgcctatggcaactggacacggagcgtatgacagcgact
ccgggctttctctttatggattttgactcggtcaaggagtacgagcaagtcagacaattt
gcagagactgttggcgttttaaagtgggcagatgataagaagggcatgttctttgccaac
aaggttgagcaaattagagatttcatgaaaaaccgacgaaaggacgatcagtga
DBGET
integrated database retrieval system
