Pestalotiopsis fici: PFICI_15021
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Entry
PFICI_15021 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PFICI_15021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfy03021
]
PFICI_15021
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_15021
Transcription machinery [BR:
pfy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PFICI_15021
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PFICI_15021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
VHS
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
19280034
NCBI-ProteinID:
XP_007841793
UniProt:
W3WKR6
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MASQESEGLLEDFREALEGLQMNSRYEIQNLTQIARESTEDALAISQALQDHIKQAAPHK
KLPALYVLDSISKNVGTPYTLFFAKRLYTTFWEAYAVADGPTRRKMHEMFKTWKEPIPGS
IDRRPVFAPEVTQPIEAALIKATASGNEQVRRMQQGRPVPQPGIPYRETSTPPGVRPPSQ
VNGYPSNTTPVSNMNGHPYGLPAQQPLTQHPFQSHSAHSTPQPPSMPAFQPPAYGGYGAP
SQPIISVDALKDDIQNLINAFRAEYARNPGDASIQTKLKALLDLQGILQAHNLPQEQLVA
IKNQITGLAVTIRATPAQTPTPVPVPPPVAVAPPPAATPTLSLDSLLGQGALAALLARNS
ATPQVSTPQPPPAAVAIRSPPPQRVEPQPPAASTTPDPMALMNMLRKAGMLPPPPSSSGS
TPVPNIPQGLQLPFPPPIPTGPPSIDNLTRDISLQTSSLKQFRPHLIPLMFEALGPQCTH
CGRRFTPDEEGKKKKTAHMDWHFKVNQRIAEAEKSGQHRSWFVDEEDWINSRETVDEDRA
TNPSATSGQGSASKAPRLQYIPVPSDPVLKNSVCPICQENFKQIYLDDAGDWVWEDATQV
DGRIYHASCHQEVSGGLVQVAYRSTPEPVLGKRKAEAVTHLHEELFGFLVGVGGQHCTFL
ARTWIWEVWH
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcaggagtcggaaggtctactcgaagactttcgggaagcccttgaaggcctc
cagatgaatagtcgctatgaaatccagaacttgactcagattgcccgagagagcacagag
gatgcacttgccatttcgcaggcattgcaggatcatatcaaacaggccgcaccgcacaag
aagctaccggcattgtacgtgctggattccatctccaaaaatgtcggcacgccctacacg
ctcttcttcgccaagcgtctctacaccaccttttgggaagcatatgccgttgccgacggt
cctacccgtagaaagatgcacgagatgttcaagacttggaaggaaccgattcctgggtcc
attgaccggcgacctgtgtttgctccggaagtcacgcagcccatcgaagctgccctgatc
aaggcaacggcgtcgggcaacgagcaggtacgaagaatgcagcaaggccgacctgttcct
caaccaggcatcccatatagagagacgtcgacacctcctggagtacgaccgccatctcaa
gtgaacggatatcccagcaacacaactcccgtctcaaacatgaacggtcacccttacggc
ctgccggcgcaacagccgctgactcagcacccctttcagtcacactcggctcactctaca
ccacagccccccagcatgcccgccttccagccaccggcatatggaggttatggtgcaccg
tctcaacccatcatcagtgtagatgccttgaaagatgacattcaaaatctcataaacgcc
ttcagggcagagtatgcacgaaaccctggagacgctagtatacagacgaagctgaaggca
ctcttggatttgcaaggcatcctgcaggctcataatctgccgcaggaacaattagtggct
attaaaaatcaaataactggcctcgccgtgactataagggctacaccagcccaaactcct
actcccgtacctgtaccccctcctgtagcagtagccccccctcctgcagcgacgccaaca
ttgtcgttagattctctgcttgggcaaggcgctctggctgcgctgcttgcgcgcaactct
gctactcctcaagtctctacacctcaaccaccgcctgctgcggttgccatcagatcgccc
cctccccagcgggttgaaccacagccgccagctgcttccacgactccagatcccatggct
ctaatgaatatgctgcggaaagccggcatgctgcccccgccgccctcttcatccggatct
acacccgtcccaaacatcccccagggtctacagctaccattcccaccacctattcctacg
ggaccaccttccattgacaacttgacccgggatatctcccttcagacctcatcgctaaag
caattccggcctcacctcattcctctcatgtttgaggctcttggtcctcaatgtactcac
tgtggacgacgcttcaccccggatgaagaaggcaagaagaagaagacagcacacatggac
tggcatttcaaggtcaaccaacgcattgctgaggcagaaaagagcggccaacatagaagt
tggtttgtcgatgaagaggactggatcaacagccgcgagacggttgatgaagaccgtgcc
acaaatcctagcgctacaagtggtcaaggctcggcctccaaggcgccgagacttcagtat
attcctgttcccagtgaccccgtcttgaagaatagtgtttgcccgatttgccaggaaaac
ttcaagcagatctacctggacgatgctggcgactgggtctgggaggatgcgactcaagtt
gatggccgaatatatcacgccagctgccatcaagaagtttccggtggtctagtgcaagtc
gcttacaggagtacacctgagccagtcttggggaagaggaaggctgaagcagtcactcat
ttgcatgaggaacttttcggcttcctcgtcggcgttggcggacagcattgcacttttctt
gcccgaacatggatttgggaggtttggcactga
DBGET
integrated database retrieval system
