Pseudomonas fragi: AV641_09405
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Entry
AV641_09405 CDS
T04285
Name
(GenBank) RNA polymerase subunit sigma
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfz03021
]
AV641_09405
Transcription machinery [BR:
pfz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AV641_09405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
Terminase_5
HTH_38
HTH_28
MerR_1
Motif
Other DBs
NCBI-ProteinID:
AMB79263
LinkDB
All DBs
Position
complement(2042211..2042705)
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AA seq
164 aa
AA seq
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MQDLYQQESARLLGVAKRIARDNALAEDIVHDAFIKIWTRAASFDPARGSARGWIFIVTR
HLALNFMRDNAREVQVSEHSEMALHDLASMQTSSGNVDSFDYRARSGRIYVCLEQLEPAR
RNCILHAYVDGYSHSQISQKLGTPLGTVKAWIKRSLVVLRECMG
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggacttgtatcagcaggaaagtgcccgtcttttaggggttgccaagcgaatcgct
cgcgacaacgccctggccgaagacatcgtgcacgatgcctttatcaagatatggactcgt
gccgccagtttcgatcctgcacgaggttctgcacgtggctggatcttcatcgtgacacgg
catttggcgctgaacttcatgcgagataacgcccgggaagtgcaggtcagcgagcacagc
gaaatggcactgcacgatttagcgtccatgcagacatcgtcagggaatgtggacagcttc
gattatcgagcccgttcaggacgtatttatgtgtgccttgagcaactggagccggcgcgg
cgcaactgcattcttcatgcatatgtcgatggctattcgcattcgcaaatatcgcagaaa
ctgggcaccccgctggggactgtcaaagcctggatcaaacgcagcctggtggtattgcgg
gagtgcatgggatga
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