Pseudomonas fragi: AV641_22250
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Entry
AV641_22250 CDS
T04285
Symbol
gabD
Name
(GenBank) NAD-dependent succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz00250
Alanine, aspartate and glutamate metabolism
pfz00310
Lysine degradation
pfz00350
Tyrosine metabolism
pfz00650
Butanoate metabolism
pfz00760
Nicotinate and nicotinamide metabolism
pfz01100
Metabolic pathways
pfz01120
Microbial metabolism in diverse environments
Module
pfz_M00027
GABA (gamma-Aminobutyrate) shunt
pfz_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
AV641_22250 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
AV641_22250 (gabD)
00310 Lysine degradation
AV641_22250 (gabD)
00350 Tyrosine metabolism
AV641_22250 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
AV641_22250 (gabD)
Enzymes [BR:
pfz01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
AV641_22250 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
AV641_22250 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
AV641_22250 (gabD)
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GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AMB81607
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Position
complement(4962446..4963888)
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AA seq
480 aa
AA seq
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MQLKDAQLFRQQAYIDGAWVDADGGQTIKVNNPATGEIIGTVPKMGAAETRRAIEAADKA
LPAWRALTAKERATKLRRWFELLIENQDDLGRLMTLEQGKPLAEAKGEIVYAASFIEWFA
EEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVIK
PASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDS
VYDAFAEKLKVAVAKLKIGNGLDEGTTTGPLIDDKAVAKVKEHIADALSKGATLLSGGNS
LEGSFFEPTILINVPKNAAVAKEETFGPLAPLFRFKDEAEVIAMANDTEFGLASYFYARD
LSRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaagacgcacagttgttccgccaacaagcctacatcgatggtgcttgggtg
gatgcggacggtggtcagacgatcaaggtcaacaacccggctaccggtgaaatcatcggt
accgtgccaaaaatgggcgcagccgaaacccgtcgcgcgattgaagctgccgacaaggcc
ttgccggcctggcgcgcactgaccgccaaagagcgtgcaaccaaattgcgtcgctggttt
gaactgttgattgaaaatcaggatgacctcggtcgcctgatgactctggagcaaggcaag
ccactggccgaagccaagggcgaaattgtctacgctgcctcgttcatcgagtggttcgct
gaagaagccaagcgcatttatggcgacgtgatccccggtcaccagccggacaagcgcctg
atcgtgatcaagcagcctatcggtgtgacggctgcaatcacgccctggaacttcccggcc
gcgatgatcacccgtaaagcaggcccggctttggccgctggctgcaccatggtcatcaag
cctgcttcgcaaaccccgttctcggccctggccctggttgagctggcgcatcgtgccggc
atccccaaaggcgtgctgagcgtagttaccggcagcgctggcgacatcggcggcgagctg
accagcaacccgatcgtgcgcaagttgtccttcaccggttcgaccgaaatcggtcgtcag
ctgatggctgaatgcgccaaggacatcaaaaaagtttcgctggaactgggcggcaacgcg
ccgtttatcgtgttcgacgacgcggatctggataaggccgtcgaaggcgcgatcatttcc
aagtaccgcaacaacggccagacctgcgtctgtgccaaccgtctgtacattcaggactcg
gtgtacgacgcgtttgccgaaaaactgaaagtggcggtggccaagctgaagatcggtaac
ggtctggacgaaggcaccaccacaggccccctgatcgacgacaaggccgtagccaaggtc
aaagagcacattgccgatgccctgagcaaaggcgccactctgttgagcggtggtaacagc
ctggaaggcagcttcttcgagccgaccattctgatcaacgtgccgaaaaacgcagccgtg
gccaaggaagaaaccttcggtccgctggcgccactgttccgcttcaaagacgaagccgaa
gtgatcgcgatggccaacgacaccgaattcggtctggcgtcgtacttctatgcccgtgac
ctgagccgtgtgttccgtgtggctgaagccctggaatacggcatggttggcgtcaacacg
gggctgatttccaacgaagttgcaccgttcggcggcatcaaggcctcgggcctgggccgt
gaaggttccaagtacggcatcgaagactatctggaaatcaaatatctctgcctgggcatc
taa
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