Phaeobacter inhibens DSM 17395: PGA1_c19790
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Entry
PGA1_c19790 CDS
T02192
Name
(GenBank) putative DNA polymerase III chi subunit, holC
KO
K02339
DNA polymerase III subunit chi [EC:
2.7.7.7
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03030
DNA replication
pga03430
Mismatch repair
pga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGA1_c19790
03430 Mismatch repair
PGA1_c19790
03440 Homologous recombination
PGA1_c19790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pga03032
]
PGA1_c19790
03400 DNA repair and recombination proteins [BR:
pga03400
]
PGA1_c19790
Enzymes [BR:
pga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PGA1_c19790
DNA replication proteins [BR:
pga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PGA1_c19790
DNA repair and recombination proteins [BR:
pga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PGA1_c19790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_chi
DUF6680
Motif
Other DBs
NCBI-ProteinID:
AFO91669
UniProt:
A0AA85ZAQ8
LinkDB
All DBs
Position
complement(2052882..2053346)
Genome browser
AA seq
154 aa
AA seq
DB search
MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVRGVDLPRITRLDERLWLGAEDQFLPH
GLVGGPHDALQPVLLSHETTPVPGTSCLMAVDGAEVTAEEVTALERVCILFDGTNPDAVA
RARVQWKSLTDAGCSAQYWSEESGRWEKKAEKAT
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
atgggggcggcctatttctatcacctgacccggcgttcgctagaagagacgctgccggtt
ctcctcgacaaggcgcttggcgccgggtggcgcattgttgtgcgcggggtggacctgccg
cggatcacgcggttggacgaacgcttgtggctgggggcggaggatcagttcctgccccat
ggtctggtcggcggcccccatgacgcgcttcagcctgtcctgctcagccatgagaccacg
ccggtgcccggcaccagctgcttgatggcggtggatggcgcggaggtcacggcggaagag
gtgacggcgctggagcgtgtttgcatcctgtttgacggcaccaacccggacgcggtcgcc
cgcgcgcgggtgcaatggaaatccctcaccgatgcggggtgttccgcgcaatattggtcc
gaagagagcgggcgctgggagaaaaaggccgagaaagccacctaa
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