Photobacterium gaetbulicola: H744_1c0710
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Entry
H744_1c0710 CDS
T03698
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgb
Photobacterium gaetbulicola
Pathway
pgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H744_1c0710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgb03019
]
H744_1c0710
Enzymes [BR:
pgb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H744_1c0710
Messenger RNA biogenesis [BR:
pgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H744_1c0710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
OCD_Mu_crystall
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJR05735
UniProt:
A0A0C5WS05
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All DBs
Position
1:850831..852078
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AA seq
415 aa
AA seq
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MPMTFASLQLNKMVLSALPDQLTTPTDIQRLAIPAVIKGKDVLALAHTGSGKTYAFGLPM
LHKVDAGQSTLQSLVLVPTRELASQVTASLLDVASQLGIRVAMLCGGVAPEAQKAELELG
AQIVVATPGRLLDFLNKGYVSLKSLQILAFDEADRLLEMGFWPDVQKIISFAPAARQTLL
FSATLPETLDQAAMGLMDNPDRVAASKQNSVVEEIHEQLYLVNKGSKPQALIALLQQNDW
PQVLVFVSEKSAADSLAKRLNKKGIDVAALHGDKEQSEREQILANFKAQQTRVLITTDLL
SRGIHVDALPVVINADLPDNAPVYVHRVGRTARAGMNGLAISLVCHGETVALNAIRKLTG
RPMETTGLEGFLVTDKPADSTVGGERKRAPRDKKANRRSQAKRSIKQFKPKRNHS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgacttttgcatcattgcaattaaacaagatggtgttgagcgctctgccagac
caattgacgacaccgaccgatatacagcgtttagctattcctgccgtaattaaaggcaaa
gatgtgctggcgttagcacacacgggaagtggcaaaacctacgcctttggtttaccgatg
ctgcacaaggttgatgcagggcaaagtactcttcaaagcctagtgctggttccgactcgt
gagctggcttcacaggtgacggcgtcattgctcgacgttgccagtcagcttggtattcgg
gtggctatgttatgtggcggagttgctccagaggcccaaaaggctgagctggagctgggc
gctcagattgtcgttgctacacccggacgattacttgattttcttaataaaggctatgtg
tcgctaaaatctttgcagatattggcattcgatgaagccgatcggctgctggaaatgggc
ttttggccggacgtacaaaaaataatctcttttgccccggctgcgagacagacattattg
ttttccgccaccttgcccgaaacactggatcaggcggcgatgggactaatggataaccca
gaccgagtggctgccagcaagcagaatagtgtggttgaagaaatccatgagcagctttac
ttggtcaacaagggcagcaaaccacaagcactgattgctttgctgcaacaaaatgactgg
ccgcaagttttggtttttgtcagcgagaagagtgcggctgacagtttagctaaaaggttg
aataaaaagggtattgacgttgctgccttgcatggtgataaagagcagtcggagcgtgag
caaatcttggccaattttaaggcgcagcaaacccgagtgctaatcaccactgatctgctt
tctcgcggtattcatgttgatgcgttgcctgtagtgatcaacgccgatcttcctgacaat
gcgccagtctatgtgcaccgcgttggcaggacagctcgtgcgggtatgaatggcctggcc
atatcactggtatgccatggtgaaaccgttgccttaaatgcaattcgcaaactcaccggt
cgaccgatggaaacgactgggctggaagggtttctggtgacagataaaccggccgattcg
acagttggtggcgagcgaaaaagggctccgcgagataaaaaagccaaccgtcgcagtcag
gcgaaacgcagcattaagcagtttaagcccaagagaaaccatagctag
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