Pseudomyrmex gracilis (graceful twig ant): 109860661
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Entry
109860661 CDS
T05003
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109860661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgc03400
]
109860661
Enzymes [BR:
pgc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109860661
DNA repair and recombination proteins [BR:
pgc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109860661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
BRCT_2
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
109860661
NCBI-ProteinID:
XP_020295503
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MATSLEAKLEFKQLCDVLENITKSRESRKKTQFLQTYFDNCRNISNKLKTECPEANVSLY
SIVRLILPSYERERGPHNLKQYSLAKIYANIFGFPKTSDNYKTLMNYREPTSVKTTENDF
ADRAYRLLAKRLPRTSTGFTIERVNVFLDTISNAKMQEKVETFRELFRQITGLEMKWITR
IVLKNLRLGIKTQRILETYHQDANEAFLVTKDLRKICDQFHDSRAKVECNIQVFSHFAPM
LLERCSIEDSDKLFKNESNSYYVQIKYDGERLQLHMKDGRYKYFTRMGHDITKNPGYGET
GSSGFLTGVFARQLNPNCHSFILDGEIMGWHKEKQKFGSKGMNFDVKKLSEKSHHQPCFV
VFDIIQHNNVLLDDVPYQSRLKLLNDVFTEEKGSLIICRSALISNREELVKEFEKCLDND
EEGLVVKKCNMKYKPNVRDGGGGYKIKAEYSKNLVQDLDLIVLGGYYGDGKYMGRIKSFM
MGVAKSHKENPTTDTTQFLCVVSVSNGIANETLRDLETKFEPHWVKERPENITGPKKCQP
DLWIRPEHSIIFTILATEMVRSSEYPTGYSLRFPRVTRIRDDKPWYNSCTLSELLSLVKN
KGVIQKLTKRKVISDDIDEMPTSDDVDEMPISKLRKSTNRNATSFERTKRITPLTRLLDG
KEICVINGTDELTKEQVEETLRQHSAKIVQNPIRNTTFCVIVGNSKTMRGRDVINSGKYD
VVSLDWFDRVTNQSDYTSPVDFLPWELLCSRNTTSQRLERTYDEYHDSFIVDANEESLKR
SFDKIAESLACGTVEDKKKLDEELFDGNASPYSLFRDVIGFFDDPMCYAKYKFRFMSGRV
KDEFDDTVTHVFVDDEIDGTNNKRRATTFQTNAQTSAKIVTCYWIEQCFRNGQLCEITDY
LIC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggccactagtttggaagccaagctcgaattcaaacaattgtgcgacgttttggaaaac
attacgaaatcacgtgagtctcgtaagaaaacgcaatttttgcaaacgtactttgacaac
tgccgaaatatcagcaacaaactgaaaacagaatgtcccgaagcgaacgtgtcgttgtat
tcaatcgtaagattgatactacctagctacgaacgagaacgcggaccgcacaatttgaaa
caatattcgctggcaaaaatctacgccaatatattcggctttccaaaaaccagcgataat
tacaaaacccttatgaattatcgagaacctacttcggttaaaactaccgagaatgacttc
gctgaccgagcttatcggttactcgcaaaacgtttaccgcgaacgagcaccggtttcacg
atcgaacgggtgaacgtgttcctcgataccatatccaatgcaaagatgcaggaaaaagtg
gaaacctttcgagaactcttccgacagatcacggggctcgaaatgaaatggataacgcga
attgttctcaaaaacttgcgactcggtatcaaaacacaaaggatattggagacttatcat
caggacgcgaacgaagcgtttctcgtgacgaaggatttgcgcaagatttgcgatcaattc
cacgattcgagagcgaaagtagaatgcaacatacaagtattttcgcatttcgcaccgatg
ctcctggagagatgtagcatcgaggacagcgacaagctatttaagaacgagagtaattcg
tattacgtgcaaattaaatacgacggcgagagactgcagctccatatgaaggacggaagg
tacaaatacttcacgcggatgggacacgatatcacgaaaaatcccggttacggggagact
ggatcttcgggtttcttgaccggtgtgtttgcacgacagttaaatccgaattgtcattct
tttatattggatggggaaataatgggctggcacaaggaaaaacaaaaattcggtagcaag
ggtatgaacttcgacgtgaaaaagctgtcggaaaagagtcatcatcaaccgtgcttcgtc
gttttcgatattattcagcacaacaatgttttacttgacgacgtaccttatcagagtaga
ttgaaattgctgaacgacgtgttcaccgaagaaaaaggctctttgatcatatgtcggtcc
gctttaatttcgaacagagaggaattggtaaaggagttcgagaagtgtctcgataacgat
gaggaaggactcgttgtaaagaaatgtaatatgaagtataagccaaatgttcgggatggt
ggcggcggttataagataaaagcagagtattccaagaatctggtacaggatttggatctg
attgtactcggcggttattacggggatggcaaatatatgggaagaattaagagttttatg
atgggcgttgccaagagtcacaaagaaaatccgacgacggatacgacgcaatttctatgc
gtcgtatcggtgagcaatggaattgcaaacgaaacgttgcgcgatctcgaaacgaagttt
gaaccgcattgggtcaaggaacgtcccgaaaacatcacgggtcctaagaagtgtcagccg
gatttgtggattcgtccggaacactcgataatcttcacaatactcgcgaccgagatggtg
cgcagcagcgaatatccaaccggatattccttgcgatttcccagagttacgagaatcagg
gatgacaagccgtggtacaattcgtgcacactttcggaactcttgtcgttggtcaaaaac
aaaggtgtgatccagaagttgaccaagcgaaaagtaatctcggacgatatcgacgaaatg
ccgacctcggacgatgtcgacgaaatgccgatctcaaagttgagaaaatcgaccaatcga
aatgcaacgtcgttcgaacgtacaaaacgaataacaccgctcacgcgattattagacggg
aaagagatctgcgtgataaacggcaccgacgaactgacgaaggaacaagtggaagaaacg
ttgcggcagcacagcgcgaagatcgttcagaatccaattcggaacaccaccttctgcgta
atagtgggaaatagcaaaacgatgcgaggaagagacgtgattaatagtggaaaatacgac
gtcgtatccctagattggtttgatcgcgtcaccaatcagtctgactacacctcgccagtt
gatttcttaccgtgggaattgttgtgcagtcgaaacaccacgagccagcgacttgagcgc
acttatgacgagtaccacgatagtttcatcgttgacgcgaacgaagagagcttgaaacgt
tcattcgataaaattgcggaatcgcttgcgtgcggtacagtcgaggataaaaagaaattg
gacgaagaattgttcgatggaaatgcgtcgccttattcgctgttcagagacgtaattgga
ttttttgacgatccgatgtgctatgcgaagtacaaatttcgtttcatgtcgggtagagtt
aaggacgaatttgacgataccgttacgcacgtgttcgtggacgacgaaatcgacggcacg
aataacaaacgtcgcgcgacaacttttcaaacaaacgcgcaaacatccgcgaaaattgtt
acgtgctattggatcgagcaatgtttccgtaacggccaattgtgcgaaattacggactat
ttgatttgttag
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integrated database retrieval system
