Pseudomyrmex gracilis (graceful twig ant): 109863570
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Entry
109863570 CDS
T05003
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03022
Basal transcription factors
pgc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109863570
09124 Replication and repair
03420 Nucleotide excision repair
109863570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgc03021
]
109863570
03400 DNA repair and recombination proteins [BR:
pgc03400
]
109863570
Transcription machinery [BR:
pgc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109863570
DNA repair and recombination proteins [BR:
pgc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109863570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
109863570
NCBI-ProteinID:
XP_020299437
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSGVISGKNLLRPNSLQCKNLHEYLKSRSHDTLNKLYHKPPICLAVFRELPEIAKHYVMR
LLFVEQPVPQAVIASWCSKLYFEEHQKVVQVLNELYVWKEASIPGGLPGWILNNTFKKNL
KIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEADGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLAECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGKNKTL
TRDTDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPDLVVSILTRDSVRQALKS
GITASQIVGYLQQHAHGKMIETGLPILPPTVVDQIKLWENERNRFIFSEGVLYSQFLSQT
DFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSKGAS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtgtaattagcggcaaaaacttattgcggcctaacagcctgcaatgcaagaac
ctgcacgagtatttgaaatcgcgttcccacgacactctaaacaaattgtatcacaagccg
ccgatatgtctggccgtgtttcgcgagttgccggaaatcgccaagcactatgtgatgaga
ttgttgttcgttgaacaaccggtgccacaagcggtgatagcgtcatggtgttcgaaactt
tacttcgaggagcatcagaaggtggtgcaggtcttgaacgaactttacgtgtggaaggaa
gcgtccatacccggaggattaccgggatggatactgaacaacacgttcaaaaagaatctg
aagatcgtgctgttgggaggcgggaaaccgtggaccatgtcgaatcagctggaaaccgac
agcaagccgcgagacgtagctttcctggattcttacgcgctagagagatgggaatgtgtg
ttgcactatatggttggttcccagcagcaagagggtatttctgcggatgctgtgcgaatt
cttttgcatgctggtttaatgaagagagatgaagccgatggaagtccagttatcacacaa
gctggttttcagtttttgctgttagatacagcttcgcaagtgtggtattttatcctgcag
taccttgacacaattgaagcacgtggtcttgacttagccgagtgtctcaccttcttgttt
caattgaatttttctaccctcggtaaagattacagtaccgaaggcatgtcggagggactc
ttgacgttcttgcagcacttgagagaatttggactggtatatcaaagaaagcgcaaggca
ggcaggttttatcccactcgactagcgttaaatatcgcaactggcaagaacaagacttta
actagagatacggacaaagaaggttacatagttgtggaaacgaattatcgagtgtacgcg
tacacaaattccaatttacaagtagccttacttggacttttctgtgaaatgttgtacagg
tttccggatttagttgtgtcaatattaacaagagattccgtaaggcaagcactgaagagt
ggaataactgcgtctcaaatagtaggttatttgcagcaacacgcgcacggtaaaatgata
gaaacaggactgccgatattaccgcctactgtagtggatcaaatcaagctttgggagaac
gaaagaaataggtttatattcagtgagggagttttgtacagtcagtttctatcacaaacc
gacttcgaagttctcagagaccatgcgctctcaactggagtattaatctggcaaagtgaa
aggaaaagaactatggtagtcaccaaagcgggtcacgatgacgtgaagaagttctggaaa
cgatactcaaaaggcgcgagttaa
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