Phaeobacter gallaeciensis DSM 26640: Gal_01910
Help
Entry
Gal_01910 CDS
T02968
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gal_01910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgd03400
]
Gal_01910
Enzymes [BR:
pgd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gal_01910
DNA repair and recombination proteins [BR:
pgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Gal_01910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
SecA_DEAD
AAA_30
RecG_dom3_C
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
AHD09662
UniProt:
V9WKM4
LinkDB
All DBs
Position
complement(1933281..1936748)
Genome browser
AA seq
1155 aa
AA seq
DB search
MAQRAITAGGAPEGFDARLILKEAASSNAPVVHVARDDKRMEATRAALAFFAPDMPVISF
PGWDCLPYDRVSPNADIAAARMATLAALVHQMPGQFVLLTTLNAATQRVPARQVLKDAAF
VAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIFPPGQSGPVRLDLFGDV
LDGARRFDPATQRTTEKLSIVELAPVSEVILDEAAVTRFRQNYRIEFGAAGTDDPLYEAV
SAGRKYQGIEHWLPFFHDRLETLFDYLPSATVTLDDQVTPARLARWDSIVDQYETRKIAM
AQKGRMDTVYKPVPPGLLYLDDASWEAAIEDHRVIQFHPLPQASGPGVIDAGGRIGRNFS
PERQLESVSLFKTLADHIKARMQVGPVVVASYSEGARERLTGLIEDEGLSEVIAINDGTR
IGKSGLHLAVWALEHGFETDDLTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDL
VVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEQSKLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQETDDQ
LRAIGEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQH
AAAFAQRFRGFPLEVRQLSRFVTAKDAAKTREGMAKGTVDIVVGTHALLAKSVRFQNLGL
LIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDAVTIREALLREHYRGGQSFYVVPRITDLPDVEAFLKEQLPELSYVVAHGQL
AAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGELEGLTGGDDQWAPQINLGVPVLIPENYVPDLDVRL
GLYRRLSDLSTKVELEGFAAELIDRFGPLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQAQDGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAEK
VVAEKKKAKAKAKSG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaacgggcaatcaccgcaggcggcgcaccagaaggctttgatgcgcggctgatc
ctgaaggaagccgccagcagcaatgcgccggtggtgcatgttgcgcgcgatgacaagcgg
atggaggcaacgcgggcggcgctggctttcttcgcgccagatatgcccgtcatcagtttt
ccgggctgggattgcctgccctatgaccgggtgtcgcccaatgcggacattgctgcggcg
cggatggccacgctggcggcgctggtgcatcagatgccggggcagtttgtgctgctgacc
acgctgaatgctgcgacccagcgggttcctgccagacaggttctgaaggatgccgccttt
gttgccgaggtggatcggcgcatcgatgaggaggccctgcggggctacctgacgcgcatg
ggcttcaccaagagcccgacggtgatggagccgggggattttgcggtgcggggcgggatc
attgatatctttcctcccgggcagagcggcccggtgcggctggatctctttggcgatgtg
ctggatggggcgcgccgttttgatccagcgacccagcggactacggagaagctgtcgatt
gtcgagctggcgccagtttccgaggtgatccttgatgaggccgctgtaaccaggtttcgg
cagaattaccggatcgagtttggtgcggcgggcacggatgatccgctctatgaggcggtg
tctgcagggcggaaataccaagggatcgaacattggttgccgtttttccatgatcggctg
gagaccctgtttgattacctgccgagtgcaacggtaacgttggacgatcaggtgacaccc
gcccgattggcccgctgggacagcatcgtggaccaatatgagacccgcaagattgcgatg
gcacaaaaggggcggatggacacggtctacaaacctgtgccgccgggtctgctttatctt
gatgatgcgtcttgggaggcggcaattgaggatcatcgggtgatccagttccatccgctg
ccgcaggccagcggacctggggtgattgatgctggtggccggattggtcgcaacttctcc
cctgagcgacagttggagagtgtcagccttttcaaaacattggcggatcatattaaagcg
cggatgcaggtgggaccggttgtggtcgcctcctattccgagggtgcgcgggagcgtttg
accgggttgatcgaggacgaaggtctgtcggaggttatcgcgatcaacgacggcacccga
attggcaaatccggtctgcatttggcggtctgggcgctggaacatgggtttgagaccgat
gatctgacggtgatttccgaacaggatgtgctgggggaccggctgatccgcgcgccaaag
aaacgccgcaaggcagagaatttcctgaccgagacacaatccctcagccctggcgatctg
gtggtgcatgtggaccatgggataggtcgctataaggggcttgaagttgtcaccgccgca
ggcgctgcgcatgagtgcattctgctggaatatgcagagcagtcgaagctgtacctgccg
gttgagaatatcgagctcctgtcgaaatacggtcatgacgaggggctgctggatcggcta
ggaggcggggcgtggcaagcgaagaaggccaagctgaaggaacggatccgcgagatggcg
gatcgtctgatccgggtcgcagcggagcgcgcgttgcgcaaggcgccgatgatggatccg
ccgccgcatgcctgggaagagttctccgcccgcttcccctatcaggaaaccgatgatcag
ctgcgcgcgattggcgaagtgatggaagatcttcaatccggctctcccatggaccggttg
atctgcggcgatgtcggcttcggcaagaccgaggttgcgatgcgcgcggccttcattgcg
gcgatgtccggtgtgcaggtggcgattgttgcgcccaccacgttgctggcgcgccagcat
gcggcggccttcgcgcagcggtttcgcgggtttcctttggaagtcaggcagttgtcgcgg
tttgttactgcaaaggacgccgccaaaacccgcgagggtatggccaaaggcaccgttgat
attgtcgtcggcacccatgctttgctggcaaaatccgtgcggttccagaacctcggcctg
ctgatcatcgacgaggaacagcatttcggtgtcgcccataaagagcggctaaagcagatg
cgcagtgacatccacgtgctgacgctgaccgcaacgccgatcccgcgaacgctgcaattg
agcctgactggcgtgcgcgatctctccatcatcggcaccccgccggtggaccgtctggcc
atccgcacatatgtgagcgagttcgatgccgtcaccatccgcgaagcgctgctgcgagag
cactatcgcggtgggcagagtttctatgtggtgccgcgcatcaccgatctgccggacgtt
gaagcttttttgaaggagcagttgccggagctgtcttatgtcgtggcgcatggtcaattg
gcggcgggtgatctggatgaccggatgaatgccttttacgatggtaaattcgacgtgctg
ctggcgacaacaattgtcgaatccggtttggatattccaactgccaacacgatggtggtg
catcgggccgatatgtttggtctggcgcagctttatcagatccgcggccgcgtggggcgg
tcaaagacgcgcgcttatgcctatctcaccaccaagccccgtgtgcgcctgacgcccggc
gcggaaaaacgcctgcgggttctgggatcgctggatacgctgggggcggggttctcgctg
gcttcgcaggacctggatattcgcggcgcgggcaatctccttggtgaagagcaatccggc
cagatgcgtgatgtgggctatgagctttatcaatccatgctggaagaggcgattgctaag
atcaaatccggtgaacttgaaggcctgaccggtggcgatgaccaatgggcgccgcagatc
aaccttggcgtaccagtgttgatcccggagaattacgtgccggatctggatgtgcgtctg
ggtctttatcgtcggctctcggatctgagcaccaaggtggagctggaaggttttgccgca
gaactgatcgaccgttttgggccgctgcccaaagaggtcaacactttgatgctggtggtg
cggatcaaggcgatgtgcaaacgggccgggattgccaagttggacggtggaccaaaaggc
gcaaccattcagttccacaatgataaattcgcctcgcctcaggggcttgtggagttcatt
caggcgcaggatggtctggccaaggtgaaggacaacaagattgtcgtgcgccgggattgg
aagaaagacagcgacaagatcaaaggtgccttcgccatcgcgcgggatctggctgagaag
gttgttgccgaaaagaagaaagccaaggcaaaggcgaaatctggttga
DBGET
integrated database retrieval system