Pluralibacter gergoviae: LG71_00440
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Entry
LG71_00440 CDS
T03300
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pge
Pluralibacter gergoviae
Pathway
pge02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LG71_00440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pge03021
]
LG71_00440
Transcription machinery [BR:
pge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LG71_00440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AIQ98458
LinkDB
All DBs
Position
101525..103369
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGDARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEELDDDDDEDEESDDDSSDDDNSIDPELAREKFGELRTQHELARDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAVAMNKPWSEKLNDVKEDVQRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgttacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
attgaagacattattcagatgatcaacgacatgggcatccaggtgatggaagaagcaccg
gacgccgatgatctgctgcttgctgaaaactccaacaacaccgatgaagacgcggaagaa
gccgcggctcaggtgctgtccagcgttgaatctgaaatcggacgcacaaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgttgagctgctgacccgcgaaggtgaaattgac
atcgccaagcgcatcgaagacggtattaaccaggttcagtgctcagttgccgaatatccg
gaagcgatcacctatctgctggagcagtacgaccgcgtagaagccggcgatgcccgcctc
tccgacctgatcaccggctttgtcgatccgaacgccgaagaagatatggcgccgaccgct
acccacgttggttccgagctctctcaggaagagctggacgacgacgacgatgaagacgaa
gagagcgacgacgactccagcgacgatgacaacagcatcgatccggagctggcccgcgag
aagttcggcgaactgcgtacccagcacgagctggcccgcgacaccatcaaggccaaaggc
cgcagccacgccgccgcgcaggaagagatcctcaagctctctgaagtgttcaagcagttc
cgcctggtgccgaagcagttcgactacctggtcaacagcatgcgcgtcatgatggaccgc
gtccgtactcaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctgttcaccggcaacgaaaccagcgaaacctggttcaacgccgcc
gtagcgatgaacaagccgtggtctgaaaagctgaacgacgtgaaggaagacgtacagcgc
ggcctgcagaagctgcagcaaattgaagaagagaccggcctgaccatcgagcaggtcaaa
gacatcaaccgccgcatgtccatcggtgaagcgaaagcccgccgggcgaagaaagagatg
gtagaggcgaacctgcgtctggttatctcgatcgccaagaagtacaccaaccgcggcctg
cagttcctcgacctgattcaggaaggcaacatcggcctgatgaaggcggtggataagttt
gaataccgccgcggctacaagttctccacctatgcaacctggtggatccgtcaggcgatc
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagacc
atcaacaagctcaaccgtatttcccgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggccgagcgcatgctgatgccggaagacaagatccgcaaagtgctgaag
attgccaaagagcctatctcaatggagacgccgatcggcgacgacgaagattcgcatctg
ggcgatttcatcgaggataccaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgcgccgccacccacgacgtactggccggcctgaccgctcgtgaagctaaagtcctg
cgcatgcgcttcggtatcgacatgaataccgaccacacgctggaagaggtcggcaagcag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaagcgctgcgtaaactgcgc
cacccgagccgctcggaagtgctgcgcagcttcctcgacgactaa
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