Pseudochaenichthys georgianus (South Georgia icefish): 117445259
Help
Entry
117445259 CDS
T09629
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117445259 (upf1)
03015 mRNA surveillance pathway
117445259 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117445259 (upf1)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117445259 (upf1)
5.6.2.5 RNA 5'-3' helicase
117445259 (upf1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117445259 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117445259 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117445259
NCBI-ProteinID:
XP_033936677
EnsemblRapid:
ENSPGEG00000014879
LinkDB
All DBs
Position
4:19494023..19510705
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDSYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSV
SGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVS
FLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC
VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDF
QWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYE
GQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR
RLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAGGRPSNMYFQTHDQIGMIGAGPGHM
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acagagttgctaggagcggacacccagggctccgaatacgactttaccgacttcaccctt
cccagccagacgcaaactcaaggccagacccagagccagctggacaaccaggttaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaagcaagccagctg
ttggccgagctcaactttgaggaagatgaagaagactcgtactacaccaaagacctgcct
ctgcacgcatgcagctactgtggtattcatgatccagcgtgcgtggtgtactgcaacacc
agcaagaagtggttctgtaatggacgtggtaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaggaggtgacgctgcataaagatgggccgctgggcgagact
gtgctggagtgttacaactgcggctgtcgcaatgtcttcctcctgggctttatcccggcc
aaggctgactctgtggtggttcttttgtgcaggcagccctgtgccagccagagtagtctg
aaggacatcaactgggacagctcacagtggcagcccctgatccaggaccgctgcttcctg
tcctggctggtaaagatcccatcggagcaggagcagcttcgcgcccgtcagatcactgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaagcctggagtggacgaggagccccagcatgtgctgctacgctatgaggacgcc
taccagtaccaaaacatctttgggcctttggtcaaactggaggctgactatgacaagaag
cttaaggagtcccagactcaagataatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggactcgggtgatatgcggctgatgcaa
ggtgacgagatctgtttgaggtataagggagacctggccccgctgtggaaaggcattggt
catgtcatcaaagtccctgacaaagactatggagatgaaattgccattgagctgaggagc
agtgttggagcacctgtggaaatcccgcacaacttccaggtggactttgtgtggaagtcc
acatcctttgacaggatgcagagcgccctgaagacgtttgcggttgacgagacctccgtg
tctggttacatttaccacaaactgctgggccacgaggtggaggatgtgaccatcaagtgc
cagctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtac
gctgtgaagacggtgctgcagaggcccctcagtctgatccagggtcctcctggcactggg
aagactgtcacctctgccactatcgtctaccacctgtcccgacagggcaacgggccagtt
ctggtttgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaagact
ggactgaaggtcgtcaggctgtgtgccaagagcagggaggccatcgagtcaccagtatcc
ttcctggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactt
cagcagctgaaggatgagaccggtgagctgtcgtctgccgatgagaagcgttacagggct
ctgaagcgcaccgctgagagggagctgctcatgaatgctgatgttatctgctgtacctgc
gtcggcgctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgag
agcacccaggccaccgagccagagtgcatggtgcccgtggtacttggagccaagcagctc
attctggtgggtgatcactgccagctcggtcccgtggtgatgtgtaagaaagcagccaaa
gcaggtctgtcccagtccctgtttgagcgcctggtggtcctggggatccggcccatccgc
ctgcaggtccagtaccgcatgcaccctgctctcagcgccttcccctccaacatcttctat
gagggctctctgcagaacggagtcactgcagctgaccgcatcaagaaagggttcgacttc
cagtggccacagcccgacaaacccatgttcttctacgtgactcagggtcaggaggagatt
gccagctccggaacctcctaccttaaccggacggaggctgccaatgtggagaagatcacc
accaggctgctgaaggctggagccaaacctgaccaaatcggcatcatcaccccgtacgag
ggtcagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactc
tatcagcaagtggaaatagccagtgtggacgccttccagggcagagagaaggacttcatc
atcctgtcttgtgtgcgtgccaacgagcaccagggcatcggcttcctgaatgacccccgt
cgtctcaacgtggcgctgaccagagccaagtacggtgtgatcatcgtgggaaaccccaag
gccctctccaagcagccgctgtggaacaacctgctgaacaactacaaagagcagaaagtc
ctggtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccccgc
aaactggtcaacaccatcaaccctggcggacgttttatgagcactgcaatgtacgacgcc
cgcgaggccctcatccctggctccgcctacgaccgcagcaatgccggcggacgtccgtcc
aacatgtactttcaaactcacgaccagattgggatgattggggcaggacccggtcacatg
gctatgaatattcccattcccttcaacctggtgatgcccccaatgcctccgcccagttac
ctggggcagaccaacggccctgctgcaggtcgtggggcgatgaagggtaagcctgggcgt
ggcgggcggcagagggtccgcgggtcggcccaccagggggccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgactcag
ggctacatcaacatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctctcccaggacagctacctaggcgatgagttcaagtcccagatcgacgtggctttgtcc
caggactctacttaccagggtgaacgtgcataccagcatggtggggtgactggactgtca
cagtactag
DBGET
integrated database retrieval system
