Pseudochaenichthys georgianus (South Georgia icefish): 117451339
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Entry
117451339 CDS
T09629
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X1
KO
K06467
CD22 antigen
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117451339
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
pgeo04090
]
117451339
04091 Lectins [BR:
pgeo04091
]
117451339
CD molecules [BR:
pgeo04090
]
Proteins
117451339
Lectins [BR:
pgeo04091
]
I-type lectins (Siglecs)
117451339
BRITE hierarchy
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
Ig_5
Ig_4
C2-set_2
Ig_6
Izumo-Ig
Glycophorin_A
Tsg
Motif
Other DBs
NCBI-GeneID:
117451339
NCBI-ProteinID:
XP_033945495
LinkDB
All DBs
Position
1:complement(46916242..46935158)
Genome browser
AA seq
997 aa
AA seq
DB search
MSLKAAASGLVVFLLSVQVVQGLDVWGVTCSSPEICAVKGSTVEISCSYTYPSTWKGSVN
TVKKTFWFTKKKDGEPVDLTTVSEYAGRVEDRCGNNICTLRIRNLRESDSAEYMFRFITN
QAGGTYSGSPGVTLSLTDTDLSVQVESKDSIRANLKCQSSCDLPGNDYVWYKNGGKIQTG
TSSLQVDFNYLDSYSCALKGFEDSPSPSVCVTGQNSNTVTSIQGSICAPKGSSVDISCTY
SSNDCITSKFWFSPKRSHQGQNPSQPEDLSEDSQYPGRVQILETERGRSTLRISDLRDSD
SAQYLFTFKTPGFEWRSDLPGTTLTVTALQVQVINISYQNSNTLAELKCHSSCSPAGVSY
VWFHNGEKVTQISTSSFEGWIQLTDMISCALEGHEAFSSPTVYAPKRPSVSVSVSGGIEE
GNSVTLTCSSDANPAAEYKWHKGDNNGHLYYFNEGPQLVFSYIQSSDSARYYCAARNKLG
GTASQSFRIDVKYAPRPPSVSVSPSAEIKERSSVTLTCSSDANPAANYTWYKKNGNRNVP
LLSERPQLVFRSIQSSDSGQYFCRAENKLGRRTSGNTFINVKYAPKLPSVSVSASAEIKE
GSSVTLTCSSDANPAATYTWYKENGNRNVPLLSEGTQLVLSSIQSSDSGQYFCRATNYLG
SSTSENISIDLKYPPKLPSVSARPSGEINEGRSVTRTCHSDANPAATYTWYKKNGNADLP
PLSEGPQLVFSSIQSSDSGQYFCTAENKLGRRKSNYISFDVKYAPKLPSVSVSPSAEIKE
GRSVTLTCSSDANPAANYTWYKENEDSPKASGQIFTITDIRAEHSGSYSCGAQNKLGRSN
STLHQIDVSGSMKSVAAGLITAVIVGIIFLIAFLLIRRKRSSKPTTEAGERPDNDAQVRM
YDRPSAEVQNATPEPEAEVCYASVRFIKNQDDALYSNIKPAHLRRQKKDEKDTEEDVVYS
TVTFKSHSATAESERHEAAEDPSALYSVVNKKPRVLT
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaaagcagcagcgagtggattggtggtcttccttctctctgtgcaagtggtt
cagggtctggatgtctggggagtgacttgctcttctcctgagatctgtgcagtgaaagga
tcaacagtggagataagctgcagctacacatacccatctacatggaaaggaagtgttaac
acagttaagaaaacattctggttcactaaaaagaaagatggtgaacctgtagatctgacc
acagtctcagagtacgcaggtcgtgtagaggatcgctgtggaaacaacatctgcactctg
agaatcagaaacctgagagagagcgactcagctgagtacatgttcaggttcataacaaac
caagcaggaggaacatatagtggttcacctggagtcactttgtctctcacagatacagat
ctctcggtgcaggtggaaagcaaagattccatcagagcaaacctgaagtgtcagagcagt
tgtgatttacctggtaatgattacgtctggtacaagaacggaggaaagattcaaacaggg
acatcttctcttcaggtcgactttaattatctggacagctattcctgtgccttgaaagga
tttgaggactctccctccccttcagtgtgtgtcactggtcaaaacagcaacacggtgact
tccattcaaggaagcatctgtgcccccaaaggatcatcagtggacatttcctgcacgtac
agcagtaatgactgtattacatcaaagttctggttcagtcctaagcgtagtcatcaggga
cagaatccctctcaacctgaggaccttagtgaagactcccagtatccaggtcgtgttcag
atccttgagacagagagaggacgctccactctgaggatctctgacctgagagactcagat
tcagctcagtatctcttcacattcaaaacaccaggctttgaatggaggagtgatttacct
ggaaccactctgactgtcacagctctccaggtgcaggtgatcaacataagttaccagaac
tctaataccttagcagagctgaagtgtcacagcagctgcagtccagctggtgtttcctac
gtctggttccataacggagagaaagtcactcaaatatcaacatcttcctttgaaggctgg
attcaactcacagacatgatctcttgtgctctggaaggtcatgaagccttctcttctcct
acagtgtatgctccaaagcgtccctctgtgtcagtgtcagtctctggtgggatagaggag
ggcaattcagtgactctgacctgtagcagtgatgctaacccagcagctgaatacaaatgg
cacaagggggataacaatggacacctttattatttcaatgaaggaccacagcttgtcttc
agctacatccagtcctctgactctgcacggtattactgtgcagctaggaacaagctgggg
gggactgcatctcaaagcttccgtatcgacgtgaaatatgctccgaggcctccctctgtg
tcagtgagtccctctgctgagataaaggagcgcagttcagtgactctgacctgtagcagt
gatgctaacccagcagctaactacacctggtacaagaagaatggaaatcgtaacgttcct
cttctcagtgaacgaccacagcttgtcttcagatccatccagtcctctgactctggacag
tatttctgtagagctgagaacaagctggggaggaggacatctggaaacacctttattaat
gtgaaatatgctccaaagcttccctctgtgtcagtgagtgcctctgctgagataaaggag
ggtagttcagtgactctgacctgtagcagtgatgctaacccagcagctacatacacctgg
tacaaggagaatggaaatcgtaacgttcctcttctcagtgaaggaacacagctcgtcctc
agctccatccagtcctctgactctggacagtatttctgtagagctacaaattatctgggg
agtagcacatctgaaaacatctctattgacttgaaatatcctccaaagctcccctctgtg
tcagcgagaccctctggtgagataaatgaggggcgttcagtgactcggacctgtcacagt
gatgctaacccagcagctacatacacctggtacaagaagaatggaaatgcggaccttcct
cctctcagtgaaggaccacagcttgtcttcagctccatccagtcctctgactctggacag
tatttctgtacagctgagaacaagctgggaaggaggaaatctaattacatctcttttgat
gtgaaatatgctccaaagcttccctctgtgtcagtgagtccctccgctgagataaaggag
ggccgttcagtgactctgacctgtagcagtgatgctaacccagcagctaactacacctgg
tacaaggagaatgaagactctccaaaagcttcaggacagatcttcaccatcactgacatc
agagctgaacacagtgggagttattcctgtggagcccagaacaagttaggacgtagcaac
tccaccttacatcagattgatgtgtcaggttcaatgaaatcagtcgctgctggactaata
actgctgttattgtgggtatcatattcctcattgcctttctgttgattagaagaaagagg
tcctcgaaaccaaccacggaagctggagagagaccagacaacgacgctcaggtacgcatg
tatgaccgcccttcagctgaagtacagaatgcaacaccagagccggaggccgaggtttgc
tatgccagcgtgagattcattaaaaaccaggacgatgctctctactccaacatcaagccc
gctcatctccgcagacaaaagaaagacgagaaggacacggaggaagatgttgtgtactct
actgtcacatttaaaagtcacagtgctactgcagaatcagagcgtcatgaggctgcggag
gatccatctgcattgtacagcgtagtcaacaaaaaaccaagagtattgacataa
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