Pseudochaenichthys georgianus (South Georgia icefish): 117453679
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Entry
117453679 CDS
T09629
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117453679 (upf3b)
03015 mRNA surveillance pathway
117453679 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117453679 (upf3b)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117453679 (upf3b)
mRNA cycle factors
P-body specific factors
117453679 (upf3b)
BRITE hierarchy
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117453679
NCBI-ProteinID:
XP_033948476
EnsemblRapid:
ENSPGEG00000017060
LinkDB
All DBs
Position
10:complement(14851650..14855728)
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AA seq
459 aa
AA seq
DB search
MKEDKENARPKDRRLELNCEDGEKTERSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EMDYLEFFSSDTSLSPHLFARAYINFKHQEDIVLFRDRFDGYVFIDSRGQEYTAVVEFAP
FQKTAKKRSKKKDAKCGTIDEDPDYNKFLEIYNGDDDKMASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRVRDEERRKWREEERRKRKDTDKMKRLDK
PLEKDKDQVKEEPKIKLLKKPDRAEDADSEKPKEKTKKPERPNKEDRPMGGVDHKRRQHI
DNKEDRGRKGEEDGRKEFRERDPDRDRERDGEREKERRQREKERLRRQDEDRRRRREREN
TFRKEKRQDEAKKDKERAFEKKKGDHTGESSRSERSERPAKDHKKEESLKRDRLRNKDRP
TIQLYQPGSRTRTRGGAESSSADRKPDTETEKVADKGDD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagataaggaaaacgctagaccgaaggatagaagactggaattaaattgtgaa
gatggagaaaagacggagaggtccaaggaaaagaaagaggccatgacaaagattgtgatc
aggcggttaccaccaagtctgaccaaggaggagctggaggagcagttacaacctctccca
gagatggactacctggagtttttctccagcgataccagcctttccccacacctctttgca
agggcttacataaacttcaagcaccaagaggatatagttctcttcagagatcgatttgat
ggttatgtgttcattgacagcagaggacaggagtatactgccgtcgtggaatttgcccct
tttcaaaagactgccaagaaaagaagtaagaaaaaggatgcaaaatgtggaacaattgat
gaagatcctgattacaataagtttcttgaaatttacaacggcgatgacgacaagatggca
tcaacgcctgagaccctgctggaagagattgaggccaaatcaaaggaacttgttgctaaa
aaaacaactcctctgttggacttcctgaagaataaacagagaatcagggaggaaaagaaa
gaagagagaagaaggagggagcttgaacgcaagcgtgtgcgtgatgaggagcgtcgcaag
tggagggaggaggagagaaggaagcgcaaagacaccgataagatgaagagactcgacaaa
ccgctggagaaagacaaggaccaagtaaaagaagaaccaaagattaagctcctgaagaag
ccagacagagctgaagatgctgattctgagaagcccaaggaaaaaaccaagaaaccagag
aggcccaataaagaggacagacccatggggggtgtcgatcataagaggcgtcagcacatc
gataataaggaggatcgaggaaggaaaggtgaggaagatgggaggaaggagttcagggag
cgcgacccagaccgagacagagagcgcgatggagagcgggaaaaggagcgccgccagagg
gagaaggagcgcctcaggcgacaggacgaagaccgccggagaaggagagagcgcgagaac
actttcaggaaggagaaaaggcaggatgaggctaaaaaggataaagagcgggcctttgag
aagaagaagggagatcacactggagagtccagtcgctctgagaggtcagagcggcctgcc
aaagaccacaagaaggaggagagcctgaaaagagatcggctacgaaacaaggaccggcct
actattcagctgtaccagcccgggtccagaacccgcactcgaggaggagccgaatccagc
tctgccgacaggaagccagacaccgagacggagaaagtggctgacaaaggagacgattga
DBGET
integrated database retrieval system
