Pseudochaenichthys georgianus (South Georgia icefish): 117462986
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Entry
117462986 CDS
T09629
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117462986 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
117462986 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117462986 (thoc1)
03041 Spliceosome [BR:
pgeo03041
]
117462986 (thoc1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117462986 (thoc1)
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
EJC/TREX
117462986 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117462986 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
117462986
NCBI-ProteinID:
XP_033961277
EnsemblRapid:
ENSPGEG00000014292
LinkDB
All DBs
Position
17:28878335..28888212
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AA seq
665 aa
AA seq
DB search
MFSGTSGCNGVKMSPSLFNFVDAKDKFTASARNALIGKTSKPLVNAFNQFPGHEAEKKTT
FDQALRGVLGDQIVEQKANCDEYLSLIYLSIDAVTEGICSATTPFLLLGDVLDCLPLDQC
DRIFSFVEKNVSTWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPL
SEKSGLNLQSQFNLENITVFNKNEQESTLGLKHTEEKEDGMEVEEGEMGEDDAPAPCSIP
IDYNLYRKFWTLQDYFRNPVQCYDKFSWMTFLKFSEETLAVFKSFKLDDMQASKRKLEEL
RASGEDVYFAKFLTNEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLHDDQ
SAWIEETTKLVYQLLKEIPPDGDKFATMVEHILNTEENWNGWKNEGCPSFVKERTVDDKP
KRPTRKRQAPEDFLGKGPDAKIFMGNDELTRLWNLHHDNMDACKSDSREFMPSLDEFFTE
AIEQADPTNMVEDEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKL
AKELPKDIPSEEIKTGEEDDDDNGDNLLKDSNDSPSIQSKMVTNQQMDDLAAKLGAEWKA
LASHLEMKAAEMREIETDSEDVDMQAKLLLVAWQDREGAQATVESLVAALNSAGFSQIAD
CLNEA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtggcacttccggttgcaacggtgtaaagatgtcgccgtccttatttaatttt
gtggacgctaaagacaaatttacggcgtctgccagaaatgcactaattggtaaaactagc
aaacctttggtaaatgctttcaaccagtttcctggacatgaggcagaaaagaagaccaca
tttgaccaggcgctgagaggggttcttggtgatcagattgttgagcagaaggccaactgt
gatgaatacctgtctctgatctacctgagtattgatgcagttacagaaggcatctgttct
gctacaactcctttccttctgctgggagacgtgctggactgtcttcctctcgaccaatgt
gacagaatcttttcttttgttgagaagaatgtttccacctggaaatcgaactccttctac
actgctgggaagaactacttgctgaggatgtgtaacgatcttttaagaaggctgtccaaa
tcccagaataccgtcttctgtgggcgaatccagcttttcctggcacgtctcttccctctg
tcggagaaatcgggtctcaatctgcagagccagtttaatctggaaaatataacagtgttc
aacaaaaatgaacaagaaagcactctcggcctgaagcacacagaggaaaaggaagatggc
atggaggtggaggaaggagagatgggagaggatgatgctcctgcaccatgctccattcct
attgactacaacttgtacagaaagttctggaccctgcaggactacttcagaaaccctgtg
cagtgttacgataaattctcctggatgacattccttaagttctccgaagagacattggcc
gtgttcaagagctttaagttggatgacatgcaggcctccaagagaaagctggaggagctg
agggcatctggagaagacgtctacttcgccaagtttctaaccaatgagaagctgatggac
ttgcagctcagcgacagtaacttcaggcggcacatcctgctgcagtacctcatcctcttc
cagtacctgaagggtcaggtcaagttcaagagctccagctgtgttctgcacgatgaccag
agcgcgtggatcgaggagacgactaaactggtttatcagctgctgaaagagatccctcct
gatggagacaagtttgccaccatggtggagcatatcctcaacacagaggagaactggaat
ggctggaaaaacgagggctgcccgagctttgtgaaagaaaggacagtagatgacaaaccc
aaaagacccacgaggaaaagacaagccccagaagacttcctcgggaaagggccggacgcc
aaaatatttatgggaaatgatgagttgactcggctgtggaacctgcaccacgacaacatg
gatgcctgcaagtcagacagcagggagttcatgccatcattggacgaattctttacggag
gctattgaacaggccgaccctactaacatggtggaggatgagtataaggtcgtgaggaac
ccaaactacggctggcgcgctctgaggctgctgtccaggagaagtcctcacttctttcaa
ccgaccaatcagaagttcaagagcctggcagactacctcgacagcatggtcagcaagctg
gccaaagaactgccgaaggatattccctctgaagagatcaagacaggagaagaggatgat
gatgataacggagacaacctcctcaaagacagcaatgacagtccgagcatacagagcaag
atggtgaccaaccagcagatggatgacttagcagccaaactgggcgcagagtggaaggct
ctggcgtctcatctggagatgaaggcggcggagatgcgagagatcgagaccgatagtgaa
gatgttgacatgcaggccaagctgctgctggtggcctggcaggaccgagagggagcacaa
gctacagtggagagcctggtggcagctctgaactctgcagggttctcccagatcgctgac
tgcctcaatgaggcttaa
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