Pseudochaenichthys georgianus (South Georgia icefish): 117467128
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Entry
117467128 CDS
T09629
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117467128 (upf3a)
03015 mRNA surveillance pathway
117467128 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117467128 (upf3a)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117467128 (upf3a)
mRNA cycle factors
P-body specific factors
117467128 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
117467128
NCBI-ProteinID:
XP_033966636
EnsemblRapid:
ENSPGEG00000024670
LinkDB
All DBs
Position
21:complement(30484745..30490730)
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AA seq
481 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDIPREQENIPENLKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKIPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQRKLSDKDIKIKLLKKSDRDDDVDSDRMKDKGDIGETDRCKWEKAGGQMKSK
DPKEKGQPESDKEQREQHGRRQREKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDGGDKLGKEDREDVGNRKERLRNKVSEKVLQTPTTEQKHANKD
RPAMQLYQPGARNRKRMSSAGKGYDCIAVGHSPELGTEHCYEAVPMATGPEKGYEKSKEE
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcgtcgtggagatacag
tttagagacatcccaagagagcaggaaaacattcctgaaaacctgaagcagaaagaagag
aagaaagaggtttttaccaaggtcgtgattcgaaggcttccaccaaacctgtcaaaggac
cagctagaggagcagctcagtccccttccatcctacgactattttgagttctttccagct
gaccaaagtctctatccccacttgttctccagagcatatattaattttaaaatcccggaa
gatatccttctgttcagggaccgatttgatggctacgtcttcattgacaacaagggacaa
gagtaccctgcagtggtggagtttgccccctttcagaaaatctcaaagaagaagctaaaa
aagaaagatgccaaaaccggaagcattgaagaagacccagaatataggcggttcttggag
aattactcctgtgatgaggagaagtctatggccaaccctgagactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacaccgctgttggaatacatcaaa
aataagaaaattgagaaacagagaataagagaggagaagagagaggagcggaggagaaga
gagctcgaaaagaaacggcaaagggaggaggaaaagaggaagcgaagagaggaggagaga
cgcaagcggaaagaggcagagaagcagaggaaactgtctgataaagacattaaaatcaag
ctccttaagaagagtgacagggacgatgacgtggattcagaccggatgaaggacaaaggt
gacattggggagacagacagatgcaaatgggagaaagccggaggacaaatgaagtcaaag
gaccccaaagaaaaaggtcaacctgagagcgacaaggagcagagagagcagcacggccgc
aggcagagagaaaaggaccatcgggggaaagatgaagagaggaaacgacagaggcaccac
tatgagtttgacaagtttatgcgccgcaaagatgagacaaaatgggggaagggctactgc
caagacagagccaagaaagaggggcaccatcatggctattcttactgccctgatggtgga
gacaaactggggaaggaggacagggaggacgtgggtaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggtgctgcagacccccaccacagaacaaaaacatgcaaataaggac
cgtcccgccatgcagctctatcagccgggcgcacgcaacaggaagcgcatgagctcggct
ggaaaaggctacgactgcatcgctgtgggacactcaccggagctcgggacggagcactgc
tacgaggctgtccccatggcaacagggccggagaaggggtacgagaaaagcaaagaggaa
cagtga
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