Pseudomonas germanica: J0G10_12445
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Entry
J0G10_12445 CDS
T08191
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J0G10_12445 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgf03400
]
J0G10_12445 (ligD)
Enzymes [BR:
pgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J0G10_12445 (ligD)
DNA repair and recombination proteins [BR:
pgf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J0G10_12445 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QYY84214
LinkDB
All DBs
Position
2786614..2789205
Genome browser
AA seq
863 aa
AA seq
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MNRNLDDYNRMRDFSATSEPAAVKRSGRKTAAEHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYEKGKLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDDAARPQDDYDVLLAEPD
SVLSERTIVGKPKLAAEQSKPLKKPAAKTRKPASGKLTGAHKAKLPTQLKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDQVQLFTRNGHDWTHKLPQQAKAVAALGLESAWLDGEM
VVANEQGVPDFQALQNAFEAGRSGNILYYLFDLPYLNGVDLREVPVEERRAALATVLGSH
EQPLLRFSEAFDETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFVI
VGYTDPKGSRSAFGALLLALHDRDSGELRYAGKVGTGFNESTLKSILAQLKPLQVKKAAV
VNPPSGFEVKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKGITEERAKPVK
AAAKKPATKKPPQKAPASNPDTAPSQLGLANGKVRITHPDRVIDAVSGTTKMQLAEYYAS
VAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDLTGQPVMLINNAE
ALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGL
KAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHIAKLLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPLFREEVAEIKGGNQWNVHNVHQRLVEVGDEP
WADMKKTRQSITVEMRKRLGLKK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgactacaaccgcatgcgcgatttttcggcgacctcggaaccg
gctgccgtcaagcgctcgggacgtaaaaccgctgccgagcatgctttgcagttctgcatc
cagaagcacgacgcttcacacctgcattacgactttcgcctggaactcgatggcgcactg
aaaagctgggcggtgccgaaagggccgtcactcgaccccaaggtcaagcggctggcggtg
catgtcgaggatcatccgctcgattacgcgacatttgaaggcagcattcccgaagggcat
tacggcgccggggatgtgatcgtctgggatcgtggcgtgtggattccgctggaggatccg
cacaaggcctacgaaaagggcaaactcaagttcgagctgcaaggcgaaaagctcggcggt
gtctggaatctggtgcgcacgcacatgccgggcaagaaggaacaatggtttctgatcaag
catcaggacgatgccgcgcggccgcaggatgattacgacgtgctgctggccgagccggac
agtgtcctgagcgaacgcacgatagtgggcaaacccaaactggccgccgagcaaagcaaa
ccgctgaagaaacctgcggcgaaaacccgcaagcccgcgagcggcaagctcaccggcgcg
cacaaggccaaattgccgacgcaactcaagccggaactggccacgctggtcgacagcgcg
ccggaagggcagtggagctacgagatcaagttcgacggctaccggatcatggcgcgcatc
gatcatgatcaggtgcaactgttcacccgcaacggacatgactggacgcacaagttgccg
caacaagccaaagcagtggccgcgctggggctggaatccgcatggctggacggtgaaatg
gtcgtcgccaacgaacagggtgtgccggactttcaggccctgcaaaatgctttcgaagcc
ggacgcagcggcaacattctctactacttgttcgacctgccttatctcaacggtgtcgac
ctgcgtgaagtgccagttgaagagcggcgcgccgcgctggccacggtgctcggcagtcat
gagcaaccgttgttgcgcttctccgaggccttcgacgaaaccccggacgccctgctcaac
agcgcctgccagatgcagatggaaggcctgatcggcaaacgccttggttcgccctatgtg
tcgcggcgcagcggcgactggatcaagctcaagtgcaaacaccgtcaggagtttgtgatc
gtcggttacaccgatccgaaaggttcgcgcagtgctttcggtgccttgttgctggcgctg
cacgatcgcgacagcggtgaattgcgctatgccggcaaggtcggcaccggtttcaacgaa
tcgacgttgaaaagcattctggcccaactcaagcccttgcaggtgaagaaggcggcggtg
gtcaatccacccagcggcttcgaggtcaaaggcgtgcactggctcaagccgaaactgctg
gcggaagtcgcattcgccgaaatgaccaaggacggttcggtacgccacgccgtgttccat
ggcttgcgcgacgacaaaccggccaagggcatcacagaggagcgagcgaaaccggtgaag
gctgcagcgaagaaaccagccacgaaaaaaccgccgcaaaaagccccggcgagcaatccg
gataccgcgccgtcacagctcggactggccaacggcaaggtgcgcatcacgcatccggat
cgggtgatcgacgcggtcagcggcaccaccaagatgcagctggccgagtattacgccagc
gtcgccgaatggatcctgccgcagctcaaggatcgcccggtggctctggtgcgcgctcca
gacggtattgccggcgagttgttcttccagaaaaacgccgagcgcctggcaatacccggc
atcaccacgctggacaaagatctcaccgggcaaccggtgatgctgatcaataacgccgaa
gcgctgatcggcgcggtgcagatgagcacggtcgaactgcacacctggaacgccaccacg
gtcgatctggacaagcccgatcgcttcgtcctcgaccttgacccggatccggcgctgccg
tggaaaagcatggtcgaagcgacggcgctgacattgaccgtgcttgatgaattggggttg
aaagcattcctgaaaaccagtggcggcaaggggattcatctggtggtgccgctgacccgc
aaacttggctgggacgaggtcaaggactttagccacgccatcgtcagtcatatcgccaag
ctgttgccggagcgcttttctgcggtgtccgggccgaaaaaccgcgtcgggcggatcttt
atcgattacctgcgcaacggtctgggcgccaccaccatctgcgcttacgccgcgcgcacc
cgcgaaggtctgccggtgtcggtgccgctgtttcgcgaggaagtcgccgagatcaagggc
ggcaatcagtggaatgtgcataacgttcaccagcgactggttgaagtcggtgacgaaccg
tgggccgacatgaagaaaacccggcaaagcattaccgtcgagatgcgcaaacgcttgggg
ttgaaaaagtga
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