Pseudomonas graminis: FX982_03120
Help
Entry
FX982_03120 CDS
T06934
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FX982_03120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgg03400
]
FX982_03120
Enzymes [BR:
pgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FX982_03120
DNA repair and recombination proteins [BR:
pgg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FX982_03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QKF52139
UniProt:
A0A6M8MBJ6
LinkDB
All DBs
Position
3496035..3498710
Genome browser
AA seq
891 aa
AA seq
DB search
MTKPVSEYTRKRNFDVTSEPAESEGKTRSKKGKALSFVIHKHDARNLHYDFRLELDGTLK
SWAVPKGPSLDPKNKRLAVHVEDHPLGYGTFEGSIPEGEYGAGDVIVWDRGIWQPHGDPQ
ETYKAGKLKFTLIGEKLTGDWALVRTRLPGNSGKEQWLLIKEKDDAVRSGEEYDIVADKP
ASVVSGATVGEGRAPAKTAKRRSAAFEPATETSTGNKPAKKPSAKKAKTPGAKKSVVPAK
LSPQLATLMDTPPEGKWFYEIKYDGYRILTRIIDGEVKFFTRNGNDWTERLPLQAKAVGE
LKLDNSWLDGEVVVLNDAGLPDFQALQNAFDIDRSMDIIYYLFDVPFLNGEDLRETPVEE
RRAALKKVLGRQKKGLLRFSEAFSAGHRDIIESASLMSLEGVIGKRAGSVYQSKRNADWI
KLKCKLRQEFVVVGFTKPQGARNGFGALLLAVNEEGAGLVYAGRVGTGFNQQMLGDLLEQ
MKPLEQDASPLAKKVTSAQARGVHWIKPTLVAEVEFGEWTRDGIIRHSAFVSLRSDKPAS
EVVHEYPRTPRDIKAPFKPSAAKAKAPSKKSATRADPSAEKPKPASKRAGKDRIDVAGVM
VSHPERVIDAESGLHKIELAQYYESVADWILPHLDHRPVALLRCPEGVEGEQFFQKHSER
MAIPNIKQLDPKLDPGHARLMEIDSVKALVGAAQMGTIELHTWGATYDQIELPDHFVLDL
DPDDQLPWRSMIEATQLTLSTLDELGLDAYVKTSGGKGMHIVVPLARRADWESVKAFAKA
LAQFMSRELPDRFTATSGPKNRVGKIFIDYLRNSRGASTVVAYSARARPGLPVSVPISRD
ELTEVKSSAQWNIANLQQRLRKLKADPWAGYKNTQRLTKPMWKRLGATPPA
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacctgtgagtgaatacacccgcaagcgcaacttcgatgtcacatccgagccg
gccgagagcgagggcaagacgcgaagcaagaaaggcaaggcgctgagtttcgtcattcac
aagcacgacgcgcgcaatctgcattacgactttcgccttgagctggatggcacgctgaaa
agctgggcagtgccgaaaggaccgagcctggacccgaagaataagcgcctggcggtgcac
gtcgaagaccacccgctgggctacggcacgtttgagggcagcattcccgagggcgaatac
ggcgcaggcgatgtgatcgtctgggaccgcggcatctggcagccccacggcgatcctcag
gaaacctacaaggccggcaagctcaaattcaccctgatcggcgaaaaactcaccggcgac
tgggcgctggtgcggacccgcttgccgggcaacagcggcaaggagcagtggctgttgatc
aaggaaaaggacgacgctgtgcgctcgggcgaggaatacgacatcgtggctgacaagccg
gcaagcgtggtcagtggcgcgacggtgggcgaggggcgcgcgccggccaagaccgccaaa
cgtcgatcggcagcgtttgagcccgccactgaaacgtcgaccgggaataagcctgcaaaa
aagccttcggcgaaaaaagcgaagacgcctggcgcaaagaaaagtgtcgtgccggccaag
ctctcgcctcagttggcgacgctcatggacaccccgcccgagggcaagtggttctacgaa
atcaagtacgacggctaccggattctgactcgcatcattgatggcgaggtgaagtttttc
acccgtaacggcaatgactggaccgagcgactgccgttgcaggccaaggccgtcggtgag
ttgaaactggacaacagctggctggacggcgaagtcgtggtgctcaacgacgccgggttg
ccggactttcaagcgctgcagaatgcgttcgacatcgaccgcagcatggacatcatctac
tacctgtttgacgtgccgttcctgaacggcgaagacctgcgcgagacgcccgtggaagaa
cgccgcgccgcgctgaagaaagtgctggggcgacagaaaaagggtctgctgcgattctcc
gaagccttctccgccggccatcgcgacatcatcgaaagcgcgagtctgatgtccctcgaa
ggcgtcatcggcaagcgggccggcagcgtgtaccagtcgaaacgcaatgccgactggatc
aagctcaagtgcaagctgcggcaggagttcgtcgtcgtcggcttcaccaaacctcagggc
gcgcgcaatggttttggcgcgctgttgctggcggtgaacgaggagggcgcgggtctggtg
tatgccggtcgggtcggcacggggttcaatcagcagatgctcggcgacttgcttgagcag
atgaaaccgctggaacaggacgcctcgccgctggcgaaaaaagtgaccagcgcccaggcc
cggggtgtgcactggataaagccgaccttggtggcggaggtcgagttcggcgaatggacc
cgtgacggcatcattcgtcactcggcgtttgtctcgttgcgcagcgataagccggccagt
gaagtggtccacgaataccccaggacgccgagagacatcaaagcaccgttcaaacccagc
gccgccaaagccaaagcgccgagcaagaaatccgcgacccgcgccgatccttcagccgag
aagccaaagccggccagcaagcgtgcaggcaaggaccgcatcgacgtggccggcgtgatg
gtcagccaccccgaacgggtgatcgacgccgaaagcggtctgcacaagatcgagctggcg
cagtattacgaatcggtggcggactggattttgccgcacctcgaccatcggcccgtggcg
ctgttgcgctgccccgaaggcgtggagggcgagcagtttttccagaaacattccgagcgc
atggcgatccccaacatcaagcagctggaccccaagctcgaccccggccacgcgcgtttg
atggagatcgacagcgtcaaggcactggtcggtgcggcgcagatgggcaccatcgaactg
cacacctggggcgcgacctacgatcagatcgagctgccggaccacttcgtcctggatctc
gacccggacgaccagttgccctggcgcagcatgatcgaagccacgcaactgacgttgtcg
accctcgacgagctgggcctggatgcgtacgtcaagaccagcggcggcaagggcatgcac
atcgtcgtgccgctggcgcgccgggcggattgggagtcggtcaaagccttcgccaaggcg
ctggcgcaattcatgtcgcgggagctgccggaccgattcactgcgacgtccgggccgaag
aaccgcgtcggaaagattttcatcgattacctgcgtaacagccggggcgccagcaccgtg
gtggcctattcggcgagggcgcggccggggttgccggtgtcggtgccgatcagccgtgac
gagctgaccgaggtgaagtcctcggcgcagtggaacatcgccaatctgcagcagcggttg
cgcaagctgaaggctgacccgtgggccggttacaagaacacccagcggctgaccaaaccg
atgtggaaacgcctgggcgccacaccgccggcgtga
DBGET
integrated database retrieval system
