Photobacterium ganghwense: FH974_10540
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Entry
FH974_10540 CDS
T07175
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FH974_10540 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_10540 (uvrB)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH974_10540 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FH974_10540 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA
ABC_tran_CTD
DUF1811
DUF87
Motif
Other DBs
NCBI-ProteinID:
QSV13184
LinkDB
All DBs
Position
1:complement(2324763..2326799)
Genome browser
AA seq
678 aa
AA seq
DB search
MDKSSSKTFKLSSNYAPSGDQPGAIKQLLEGLEAGLAHQTLLGATGTGKTFTVANVIAEA
DRPTLILAPNKTLAAQLYGEMREFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVN
SHIEQMRLSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHIRRGDIIDQRDILRRL
AELQYTRNEMAFERGHFRVRGEVIDIFPAESEKEAVRIELFDEEVECISVFDPLTGAILQ
RDLPRYTIYPKTHYVTPRERVLEAIEGIKVELISRKKDLLANNKLVEEQRITQRTQFDIE
MMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPPDGLLIIDESHVTVSQIGAMYRGDR
SRKENLVEYGFRLPSALDNRPLKFEEFEALAPQTLYISATPGSYEIDKSGGEIAEQVVRP
TGLLDPEIEVRPVATQVDDLLSEIRIREAKNERVLVTTLTKRMAEDLTEYLSEHGVKVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL
IQTIGRAARHLEGRAILYADRITGSMERAINETNRRRDKQIAHNEKHGIVPQALNKKVSD
IMELGGAGKGRKTNRAAQLHKVAEKKGTYSTMTPQQLESEIQGLEKQMYDAAQNLEFETA
AELRDKIHSLREQFIANS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggataagtcttctagcaaaacgtttaagctgtcttccaactatgctccttccggtgac
cagccgggggctattaagcagttgctggaggggttggaagccggactggcgcaccagacg
ctgctgggcgcaacgggaaccggtaaaaccttcacagtggcgaatgtgattgccgaagca
gatcgtcctaccttgattcttgctcccaataaaacgctggcagcgcagttgtatggcgag
atgagagagttctttccggaaaatgcggtggaatatttcgtctcttattatgactactat
cagccggaagcctacgtgccgaccacggatacgtttatcgaaaaagacgcctcggtgaat
tctcacattgagcaaatgcggctgtcggccactaaggcgctgatggagcgacgcgatgtc
atcattattgcttcggtgtcggcgatttatggtctgggggatccggactcatacctgaaa
atgatgctgcatattcgccgtggcgatattatcgaccagcgcgatatcttgcgtcgtctt
gcggagctgcaatatacccgtaatgagatggcttttgagcgggggcatttccgggtgcgt
ggcgaagtcattgatatcttcccggcggaatcggaaaaagaagccgtccgtatcgagctg
tttgatgaggaagtggaatgtatcagtgtgtttgatcctcttaccggcgccattctgcag
cgcgatctgccgcgttataccatttatccgaaaacccactacgtcacgccgcgagaacgg
gtactggaagctattgaaggcatcaaagtcgagctgataagccgtaaaaaagatctgctg
gcaaataataagctggtggaagagcagcgtattactcagcgtactcagtttgatattgag
atgatgaatgaactgggcttttgttccggtatcgaaaactactcccgttacctcagtggg
cgcgcggaaggtgaaccgccaccgacactgtttgattacctgccgccagatggtttgctg
atcatcgatgaatcccacgtgacggtttcgcaaatcggggctatgtaccggggggatcgt
tcccggaaggaaaatctggttgagtacgggttccgactgccgtcggcattggataaccga
cctttgaaatttgaagaatttgaagcactggctccgcagacgctttatatttctgcgacg
ccgggcagctatgagattgataaatctggtggtgaaattgcagagcaggtggttcgtcct
actggcctgctggatcctgaaattgaggtgcgaccggtagccacccaggtggatgatctg
ctctcggaaatccgtattcgagaggccaaaaatgagcgggtgctggtaacaaccctgacc
aagcgtatggcagaagacctgactgaatatctgagtgagcatggggtaaaagtgcggtac
ctccactcagatattgataccgttgagcgggttgagattattcgtgatttgcgtctgggt
gagtttgatgtgctggtcgggatcaacctgttgcgggaaggtctggatatgccggaagta
tcactggtggcaatcctggatgccgacaaagaaggcttcctgcgctctgagcgttctctg
atccagacaattggccgtgcggcacgtcaccttgaaggccgcgcgattctgtacgctgac
cggataaccgggtcaatggaacgggcgatcaacgaaactaaccggcgtcgtgacaagcag
atcgcgcacaatgaaaagcacggcattgtgccacaagcactcaacaagaaagtgtccgac
atcatggagctgggtggtgccggtaaaggccgtaaaacgaatcgggctgcacagctgcat
aaagtggctgagaagaaaggtacgtatagcacgatgactccgcagcagctggagtcggaa
attcagggacttgaaaagcaaatgtatgatgctgcccagaacctggagtttgagaccgcg
gccgagttgcgcgataagatccacagcctgagagagcagttcatcgcgaacagttga
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