Pteropus giganteus (Indian flying fox): 120605345
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Entry
120605345 CDS
T07511
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pgig
Pteropus giganteus (Indian flying fox)
Pathway
pgig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120605345 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgig03400
]
120605345 (LIG4)
Enzymes [BR:
pgig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120605345 (LIG4)
DNA repair and recombination proteins [BR:
pgig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120605345 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
120605345
NCBI-ProteinID:
XP_039722230
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MASRQFIRPLDPHGRGTEHFEDRAALGTRSLVRALELDPHPWDVGQDLCSTLERIQRSKG
RAEKIRYFREFLDSWRKFHDALHKNQKNVTDSFYPAMRLILPQLERERMAYGIKETMLAK
LYIELLNLPREGKDALKLLNYRTPTGTRGDAGDFAMIAYFVLKPRCLQKGSLSIQQVNDI
LDSVASNNSSKRKDLIKKSLLQFITQSSALEQKWLIRMIIKDLRLGFSEQTVFSVFHNDA
AELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAAIADIERIEKDMKNQSFYIE
TKLDGERMQMHKDGDIYEYFSRNGYKYTEQFGASPQEGSLTPFVHNAFKTDIQVCILDGE
MMAYNPNTQTFMQKGNKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILTS
IITPIPGRIEIVQKTQAHTKKEVIDALNEAIDKREEGIMVKHPLSIYKPDKRGEGWLKIK
PEYVSGLMDELDVIIVGGYWGKGSRGGMMSHFLCAVTEKPPSGEKPSVFHTLCRVGSGYT
MKELYDLGLKLAKYWKPFHKKAPPRSIVCGTEKPEVYIEPCNSVIVQIKATEIVPSDMYK
TGCTLRFPRIEKIREDKEWRECMTLDDLEQLRGKASGKLASKHFYVGGDDEPQEKKRKAA
PKTKKVIGIIEHLKAPNLSNVNKVSSIFEDVEFCVMSGTESCPKLDLENRIAELGGYIVQ
NPGPDTYCIIAGSENIRVKNIISSNKHDVVKPEWLLECFNTKSCVPWQPRFMIHMCPSTK
KHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSSEQTPKEMASVIADLEYRYSWECSPLS
MFRHYAIYLDLYTVINDLSTEIEGTRLAFTALELRFHGAKVVSCLAEGVSHVIVGEDHSR
VVDFKAFRRTLKIKFKILQDDWVTDSIDKCELQEEKQYLV
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcgtcagttcatccgcccactggatccacatgggaggggtacggagcacttc
gaagaccgcgctgcgttaggaaccaggtctttggttcgggcgcttgaactagacccgcac
ccctgggacgtgggacaagatttatgttcaactttagaacgaatacagagaagtaaagga
cgtgcagaaaaaattagatacttcagggaatttttagattcttggagaaaatttcatgat
gcccttcataagaaccaaaaaaatgtcacagactctttttacccagcaatgagacttatt
cttcctcagctagaaagagagagaatggcctatggaatcaaagaaactatgcttgctaag
ctttatattgaattgctcaatttacctagagaaggaaaagatgctcttaaacttttaaat
tacagaacacctactggaactcgtggagatgctggagactttgccatgattgcatacttt
gtattgaaaccaagatgtttacagaaaggaagtttaagcatacagcaagtaaatgacatt
ttagactcagttgccagcaataattcttccaaaagaaaagacctaataaagaagagtctt
cttcagtttataactcagagttcagcacttgaacaaaagtggcttatacggatgataata
aaggacttaagacttggttttagtgagcaaactgtattttctgtttttcataatgatgct
gctgagttgcataatgtcaccacagatctggaaaaagtctgtagacaactgcatgatcct
tcagtaggactcagtgatatttctatcactttattctctgcctttaaaccaatgctagct
gcaatagcagatattgaacgaattgagaaggacatgaaaaaccagagtttctacatcgaa
accaagctagatggtgagcgaatgcaaatgcataaagatggggatatatacgaatacttc
tcccgaaatggatataaatatacagaacagtttggtgcttctccacaggaaggttctctt
acaccatttgttcataacgcattcaaaacagatatacaagtctgtatccttgatggtgag
atgatggcctataatcctaatacacagacttttatgcaaaaggggaataagtttgatatc
aaaagaatggttgaagattctgatctgcaaacttgttactgtgtttttgatgtattgatg
gtcaataataaaaagctaggacatgagaccctgagaaagaggtatgaaattcttactagt
attattacaccaataccaggtagaatagaaatagtacagaaaacacaggctcatactaag
aaagaagtaattgatgctctgaatgaagcaatagataagagagaagagggaatcatggta
aaacatcctctatccatttataagccggacaaaagaggtgaaggatggttaaaaattaaa
ccagagtatgtaagtggactgatggatgaactggatgtcataattgtcgggggctattgg
ggtaaaggttcacggggtggaatgatgtctcattttttgtgtgctgtaacagagaagcct
ccttctggtgaaaaaccatcagtgtttcatactctctgtcgtgttggctcaggttacacc
atgaaagaactgtatgatctgggcttgaaattagccaaatattggaagccttttcataaa
aaagctccaccacgtagcattgtatgtggaacagagaagccggaagtgtacattgaacct
tgtaattctgtcattgttcagattaaagcgacagagattgttcccagtgatatgtataaa
actggctgtactttgcgttttcctcgaattgaaaagataagagaagacaaagagtggcgt
gaatgtatgactctggatgacttagaacaacttcgagggaaagcatctggaaagcttgca
tctaaacacttttacgtaggtggcgacgatgaaccacaagaaaaaaagcggaaagctgcc
ccaaagactaagaaagttattggaataatcgaacatttaaaagcacctaacctttctaac
gtaaacaaagtttccagtatatttgaagatgtagagttttgtgttatgagtggaactgag
agctgtccaaagcttgatctggagaacagaattgcagaacttggtggttatatagtacaa
aacccaggcccagacacatactgtattattgcagggtctgagaacattagagtgaaaaac
ataatttcttcaaataaacatgatgttgtcaagcctgagtggctgttagaatgttttaac
accaaaagctgtgtgccatggcagcctcgctttatgatccatatgtgcccatcaacaaaa
aaacattttgcccgtgaatatgattgttatggtgatagttattttattgatacagatttg
aaccaactgaaggaagtattctcaggaattaaaaattctagtgaacagactcctaaagaa
atggcttctgtgattgctgatttagaatatcgatattcctgggagtgctctcccctcagt
atgtttcgacactacgccatttatttagacttgtatactgttattaatgacctgagtacc
gaaattgagggaacaagattagcttttacagccttagagcttcgatttcatggagcaaaa
gttgtttcttgtttagctgagggagtgtctcatgtaatcgttggggaggatcatagtcgt
gttgtagattttaaagctttccgaagaactcttaagataaagtttaaaattctgcaagac
gattgggtaactgattcaatagacaaatgtgagttacaggaggaaaaacaatatttggtt
taa
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