Pteropus giganteus (Indian flying fox): 120606986
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Entry
120606986 CDS
T07511
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pgig
Pteropus giganteus (Indian flying fox)
Pathway
pgig03030
DNA replication
pgig03410
Base excision repair
pgig03420
Nucleotide excision repair
pgig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120606986 (LIG1)
03410 Base excision repair
120606986 (LIG1)
03420 Nucleotide excision repair
120606986 (LIG1)
03430 Mismatch repair
120606986 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgig03032
]
120606986 (LIG1)
03400 DNA repair and recombination proteins [BR:
pgig03400
]
120606986 (LIG1)
Enzymes [BR:
pgig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120606986 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
120606986 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120606986 (LIG1)
DNA replication proteins [BR:
pgig03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120606986 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120606986 (LIG1)
DNA repair and recombination proteins [BR:
pgig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120606986 (LIG1)
NER (nucleotide excision repair)
Other NER factors
120606986 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
120606986 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
120606986
NCBI-ProteinID:
XP_039724537
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
MQRSIMSFFYPKTEGKAKKPEEETPSSVGETEPPPKAALKERNGMVPESDSPVKRPGRKA
ARVLGSEGEEEDGARTPPWGQKPAAASPRERSPAPARASPPGIPKRRTARKQLPKRTRGG
EQSEDEDREAKRKKEGEAETPTESPPESEGAEEKEAEEEDLPTVPPELPAACEAEPPAGS
GAEPGAAVGQGLREEDRAKPLARGPKTLNSFFAPRKPAAKTEVREEGSGTPRKEAPEGPP
EPSGYNPAQNSYHPVEDACWKQGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVA
LSPSDLLPILYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGL
VAENSRSTQRLMLPPPTLTASGVFAKFRDIARLTGSASTAKKIEIIKGLFVACRHSEARF
IARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPAVVDAGKGRTAEARKTWLEEQGM
VLKQTFCEVPDLDRVVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVGEVLKRFEEA
AFTCEYKYDGQRAQIHLLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDAE
AVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQL
LRENFMETEGEFVFATSLDTKDTDQIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRSHN
WLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEDSEELQAICKLGTGFS
DEALEEHHHRLQALVLPSPRSYVRADGAVAPDHWLEPSAVWEVKCADLSLSPIYPAARGL
VDSEKGVSLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQVQNQQGSHSESDPEDFY
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcatgtcatttttctaccccaagacagagggcaaagcgaagaagcca
gaggaggagacgcccagcagcgtcggggaaacagagcccccgccgaaggcggcgctgaag
gagaggaacggaatggtgcctgagagcgactctccggtgaagaggccggggaggaaggcg
gcccgcgtcctgggcagtgagggggaggaggaggacggagcccgcacgcccccctggggc
cagaagcccgcggcggcctcgccccgggagcgcagccccgctccggcccgcgcctccccg
cccggcatcccgaagcggcgcacagctcggaagcagcttcctaaacggacacgtgggggg
gagcagagcgaggacgaggacagagaagccaagaggaagaaggagggagaagcagagacc
ccaacagaaagtcccccagaatcggaaggggccgaagagaaagaggcagaagaggaggac
ctgcccacggtgccccccgagctccccgcggcctgcgaagcagagcccccggcaggaagc
ggtgcagagcccggggcggccgtgggccaggggctgcgggaggaggaccgggcgaagcct
ctcgccaggggtcccaagacgctcaacagtttcttcgctccccggaagccggcagccaaa
acagaagtgagagaagaggggtctggcaccccaaggaaggaggcgcctgagggcccgccg
gagccatccggctacaatcctgcccagaacagctaccatcccgtcgaagacgcctgctgg
aagcagggccaaaaggtcccttatctggccgtggcccggacgttcgagaagatcgaggag
gtttcggctcggctccgcatggtggagacgctgagcaacctcctgcgctccgtggtggcc
ctttcgccgtctgacctcctccccatcctctacctcagcctcaaccacctggggccgccc
cagcagggcctggagcttggcgttggggacggtgtccttctcaaggcagtggcccaggcc
acaggtcggcaactcgagtctgtccgggctgaggcagccgagaagggtgacgtgggcctg
gtggctgagaacagccgcagcacccagaggctcatgctgcccccgcccaccctcaccgcc
tccggggtcttcgccaaattccgggacatcgcccggctcactggcagcgcgtccacagcc
aagaagatagagatcatcaaaggcctgtttgttgcctgccgccactcggaagcccggttc
attgccagagccctgagcggacggctgcgcctcgggctggcagagcagtcggtgctggcc
gccctcgcccaggccgtgagcctcacgccccccgggcaaggcttccccccagccgtggtg
gatgccgggaagggcaggacagcagaggccaggaagacgtggctggaggagcaaggcatg
gtcctgaagcaaacgttctgcgaggtgcctgacctggaccgcgttgtccctgtgctgctg
gagcacggcctggagcggctcccggagcactgcaggctgagtccaggggtccccctgaag
ccaatgttggcccacccgacccggggcgtcggcgaggtcctgaagcgctttgaggaggcg
gctttcacctgcgagtacaaatatgatgggcagagggcacagatccacctcctggaaggc
ggggaggtgaagatcttcagcaggaatcaggaagacaataccgggaagtaccccgacatc
atcagccgcatccccaagatcaaactcccctccgttacgtccttcatcctggacgccgaa
gctgtggcctgggaccgggagaagaagcagatccagccgttccaagtgctcaccacccgt
aaacgcaaggaggtggacgccgcggagatccaggtgcaggtgtgtctgtacgcctttgac
ctcatctacctcaatggagagtccctggtgcgtgagcccctctcccgacgccggcagctg
ctccgggagaacttcatggagacggagggcgagtttgtcttcgccacctccctggacacc
aaggacacggaccagatcgccgagttcctggagcagtcggtgagagactcctgcgagggg
ctgatggtgaagaccctggatgtcgacgccacctacgagatcgccaagaggtcgcacaac
tggctcaagctgaagaaggactacctggacggcgtgggggacacgctggacctcgtggtg
attggcgcctacctgggccggggcaagcgggccggccgctacgggggcttcctcctggcc
gcctacgacgaggacagcgaggagctgcaggccatatgcaagctgggaaccggcttcagc
gacgaagcgctggaggagcatcaccaccgcctgcaggccctggtgctgcccagcccacgc
tcctacgtgcgggcggacggggccgtggcccccgaccactggctggagcccagcgccgtg
tgggaagtcaagtgcgccgacctctctctgtcccccatctaccccgccgcccgcggcctg
gtggacagcgagaagggcgtctccctgcgcttccctcggttcatccgcgtccgcgaagac
aagaagccggaggaggccaccaccagtgcccaggtggcctctctgtacaggaagcagagt
caggttcagaaccagcaaggctcacactcggagtccgacccggaggatttctactag
DBGET
integrated database retrieval system
