Panacibacter ginsenosidivorans: FRZ67_07570
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Entry
FRZ67_07570 CDS
T06131
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRZ67_07570 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgin03400
]
FRZ67_07570 (ligD)
Enzymes [BR:
pgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRZ67_07570 (ligD)
DNA repair and recombination proteins [BR:
pgin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRZ67_07570 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QEC67157
UniProt:
A0A5B8V6P7
LinkDB
All DBs
Position
complement(1825521..1827950)
Genome browser
AA seq
809 aa
AA seq
DB search
MSLSTYHKKRDFKQTREPKGSAARKKGSRFVVQRHDASHLHYDFRLELGGVLKSWAVPKG
PSLNPSEKRLAVMVEDHPVDYITFKGTIPKGNYGAGTVQIWDNGTFIPVDEKHEPITEAK
ALANIKKGEIKFSLKGKKLKGEFVLVRLKKDEKNWLMIKHKDDYSVNKLYDAEDEKNGVI
AKKTVASIRHGKAKKIATYIKPMLASIAKNAFDDKDWLFEIKWDGYRAIAEIKKGEVKFY
SRNGIDFSERFPAIVKELQKIKHDVILDGEIVLLNDKNLPDFQKLQHYENHLNYPLMYYV
FDMLMLDGKSTTELPLTDRKELVKKMLKKNGVIRYCDDVDEKGISFFATAKEQGLEGIIA
KKKDSTYAKGARSKEWLKIKNVQSTESVIVGYTEPKGGRHHFGSLILANKKGKGWQYRGH
VGTGFNNDLLASLKKLMKPLETDASPFKEEVPVNGETTWLKPKLVADIAYTEITRDGSFR
HPVFLRLRDEKNISAVNDESENAIEPVAKERKVTIGKDVIVITNQHKIFWPDEGYTKGDL
VNYYDSISKYILPHLKNRPLSLKRNPNGIRDAGFFHKDAGEHAPKYASVFPVHSESSNKT
VDYIVCNNKATLLYLANLGCIEINPWNSTVQKPDHPTWMVIDIDPSDKNDFTQVVDVALV
TKEILDQAGIISFCKTSGASGLHVYAPMKNKYDYNTVKDFAHIIASLVHEQLPDTTSIER
SLSKRGPHIYIDYLQNRSGQTLASVYSLRPVEGANASAALEWKEVNHKLHPSQFNIQNMP
ERLEKKHDLFSKVLTTSNNIQKALKLLNV
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaagcacttatcataaaaaaagagactttaaacaaacacgagaaccaaaagga
agtgcagcaaggaaaaaaggttctcgttttgttgttcaaaggcatgatgcctctcatctt
cattatgattttcgcctggagttgggaggtgtgttgaaaagttgggctgtgccaaaaggc
ccttcattgaatccttctgagaaaagattggcggtaatggtcgaagatcacccggttgat
tatattactttcaaaggaaccattccgaaaggcaattatggagcgggtacagtgcagatt
tgggataatggaacgtttatccctgttgatgaaaagcacgaaccaataacagaagcaaaa
gcattggcaaacataaaaaagggtgaaataaaattttcgctgaaaggaaaaaaattaaaa
ggtgagtttgttttggtacgcctgaagaaagatgagaagaactggttaatgataaaacac
aaggatgactattctgtaaataagttgtacgatgctgaagatgaaaagaatggcgtaata
gcaaagaaaacggtagcgtcaataagacatggaaaagcaaaaaaaatagcgacttacata
aagccaatgcttgcatcaattgctaagaatgcatttgatgataaagactggttgtttgaa
ataaaatgggatgggtatcgtgctatagctgaaataaaaaaaggtgaagtgaaattttat
tcacgtaatggtatagatttttcagaacgttttccagctatagtaaaagaactgcaaaag
ataaaacatgatgtaatactcgatggtgagatcgttttgctgaacgataaaaatcttccc
gattttcaaaagctgcagcattacgaaaatcatttgaattatcctttgatgtattatgtt
ttcgatatgctgatgttggatggaaaatcaacaacagagcttccattgacagacaggaaa
gaactggtgaaaaaaatgttgaagaagaatggtgttatccgttactgcgatgacgttgat
gaaaaaggcatttcattttttgcaactgcaaaagaacaaggactcgagggaattattgca
aaaaagaaagacagcacttatgcaaaaggcgcacgcagtaaagaatggcttaagataaaa
aatgtgcaaagcaccgaatctgttattgttggttatacagaaccaaaaggagggaggcat
catttcggatctttgatacttgcaaataaaaaaggaaaaggctggcaatatcgcggtcat
gtaggcacaggttttaacaatgatctgcttgcatccctaaaaaaattaatgaagcctttg
gaaacagatgcttcaccatttaaagaggaagtgccggttaatggtgagacaacatggctc
aagccgaaactggttgccgatattgcatatacagaaataacaagagatggcagctttcgc
catcccgtatttttaagattacgtgacgaaaaaaatataagtgctgtgaacgatgaaagt
gaaaatgcaatagaacctgttgccaaagaaagaaaagtaactattgggaaagatgttatt
gtcatcaccaatcaacataagattttctggcccgatgaaggttatacgaaaggcgatctg
gtaaattattatgacagtatttcaaaatatatactgccgcatttaaagaacagaccatta
tcgctgaagcgaaatccaaacggtatcagagatgcagggttttttcataaagatgcaggt
gaacatgcaccaaaatatgcttctgtatttcctgtgcacagtgagagcagcaacaagaca
gttgattatattgtgtgcaacaataaagcaacattattgtatctcgccaatcttggttgt
attgagatcaatccatggaacagcactgttcaaaaacctgatcatccaacctggatggta
attgatattgatccttccgataaaaatgattttacgcaggttgtagatgttgcgcttgtt
acaaaagaaattttagaccaggcaggtataataagtttttgtaaaacatccggcgcctcc
gggttgcatgtttatgcgccaatgaaaaataaatatgattataatacggtaaaagatttt
gcgcacatcattgcatcattggttcatgaacagttaccggatacaacttctatagagcgt
tcattaagtaaacgtggaccacatatttatatagattacttgcaaaacaggagcgggcaa
acgctggcatctgtgtacagcctcaggcctgttgaaggagcaaatgcatctgccgcattg
gagtggaaagaagtaaatcataaactgcatccatcccagttcaacatacaaaacatgcct
gaaagattggaaaagaaacatgatctttttagtaaagtacttactacttcaaataacata
cagaaagctttgaaattgttgaatgtctaa
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