KEGG   Panacibacter ginsenosidivorans: FRZ67_07570
Entry
FRZ67_07570       CDS       T06131                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pgin  Panacibacter ginsenosidivorans
Pathway
pgin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pgin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FRZ67_07570 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pgin03400]
    FRZ67_07570 (ligD)
Enzymes [BR:pgin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FRZ67_07570 (ligD)
DNA repair and recombination proteins [BR:pgin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FRZ67_07570 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QEC67157
UniProt: A0A5B8V6P7
LinkDB
Position
complement(1825521..1827950)
AA seq 809 aa
MSLSTYHKKRDFKQTREPKGSAARKKGSRFVVQRHDASHLHYDFRLELGGVLKSWAVPKG
PSLNPSEKRLAVMVEDHPVDYITFKGTIPKGNYGAGTVQIWDNGTFIPVDEKHEPITEAK
ALANIKKGEIKFSLKGKKLKGEFVLVRLKKDEKNWLMIKHKDDYSVNKLYDAEDEKNGVI
AKKTVASIRHGKAKKIATYIKPMLASIAKNAFDDKDWLFEIKWDGYRAIAEIKKGEVKFY
SRNGIDFSERFPAIVKELQKIKHDVILDGEIVLLNDKNLPDFQKLQHYENHLNYPLMYYV
FDMLMLDGKSTTELPLTDRKELVKKMLKKNGVIRYCDDVDEKGISFFATAKEQGLEGIIA
KKKDSTYAKGARSKEWLKIKNVQSTESVIVGYTEPKGGRHHFGSLILANKKGKGWQYRGH
VGTGFNNDLLASLKKLMKPLETDASPFKEEVPVNGETTWLKPKLVADIAYTEITRDGSFR
HPVFLRLRDEKNISAVNDESENAIEPVAKERKVTIGKDVIVITNQHKIFWPDEGYTKGDL
VNYYDSISKYILPHLKNRPLSLKRNPNGIRDAGFFHKDAGEHAPKYASVFPVHSESSNKT
VDYIVCNNKATLLYLANLGCIEINPWNSTVQKPDHPTWMVIDIDPSDKNDFTQVVDVALV
TKEILDQAGIISFCKTSGASGLHVYAPMKNKYDYNTVKDFAHIIASLVHEQLPDTTSIER
SLSKRGPHIYIDYLQNRSGQTLASVYSLRPVEGANASAALEWKEVNHKLHPSQFNIQNMP
ERLEKKHDLFSKVLTTSNNIQKALKLLNV
NT seq 2430 nt   +upstreamnt  +downstreamnt
atgagtttaagcacttatcataaaaaaagagactttaaacaaacacgagaaccaaaagga
agtgcagcaaggaaaaaaggttctcgttttgttgttcaaaggcatgatgcctctcatctt
cattatgattttcgcctggagttgggaggtgtgttgaaaagttgggctgtgccaaaaggc
ccttcattgaatccttctgagaaaagattggcggtaatggtcgaagatcacccggttgat
tatattactttcaaaggaaccattccgaaaggcaattatggagcgggtacagtgcagatt
tgggataatggaacgtttatccctgttgatgaaaagcacgaaccaataacagaagcaaaa
gcattggcaaacataaaaaagggtgaaataaaattttcgctgaaaggaaaaaaattaaaa
ggtgagtttgttttggtacgcctgaagaaagatgagaagaactggttaatgataaaacac
aaggatgactattctgtaaataagttgtacgatgctgaagatgaaaagaatggcgtaata
gcaaagaaaacggtagcgtcaataagacatggaaaagcaaaaaaaatagcgacttacata
aagccaatgcttgcatcaattgctaagaatgcatttgatgataaagactggttgtttgaa
ataaaatgggatgggtatcgtgctatagctgaaataaaaaaaggtgaagtgaaattttat
tcacgtaatggtatagatttttcagaacgttttccagctatagtaaaagaactgcaaaag
ataaaacatgatgtaatactcgatggtgagatcgttttgctgaacgataaaaatcttccc
gattttcaaaagctgcagcattacgaaaatcatttgaattatcctttgatgtattatgtt
ttcgatatgctgatgttggatggaaaatcaacaacagagcttccattgacagacaggaaa
gaactggtgaaaaaaatgttgaagaagaatggtgttatccgttactgcgatgacgttgat
gaaaaaggcatttcattttttgcaactgcaaaagaacaaggactcgagggaattattgca
aaaaagaaagacagcacttatgcaaaaggcgcacgcagtaaagaatggcttaagataaaa
aatgtgcaaagcaccgaatctgttattgttggttatacagaaccaaaaggagggaggcat
catttcggatctttgatacttgcaaataaaaaaggaaaaggctggcaatatcgcggtcat
gtaggcacaggttttaacaatgatctgcttgcatccctaaaaaaattaatgaagcctttg
gaaacagatgcttcaccatttaaagaggaagtgccggttaatggtgagacaacatggctc
aagccgaaactggttgccgatattgcatatacagaaataacaagagatggcagctttcgc
catcccgtatttttaagattacgtgacgaaaaaaatataagtgctgtgaacgatgaaagt
gaaaatgcaatagaacctgttgccaaagaaagaaaagtaactattgggaaagatgttatt
gtcatcaccaatcaacataagattttctggcccgatgaaggttatacgaaaggcgatctg
gtaaattattatgacagtatttcaaaatatatactgccgcatttaaagaacagaccatta
tcgctgaagcgaaatccaaacggtatcagagatgcagggttttttcataaagatgcaggt
gaacatgcaccaaaatatgcttctgtatttcctgtgcacagtgagagcagcaacaagaca
gttgattatattgtgtgcaacaataaagcaacattattgtatctcgccaatcttggttgt
attgagatcaatccatggaacagcactgttcaaaaacctgatcatccaacctggatggta
attgatattgatccttccgataaaaatgattttacgcaggttgtagatgttgcgcttgtt
acaaaagaaattttagaccaggcaggtataataagtttttgtaaaacatccggcgcctcc
gggttgcatgtttatgcgccaatgaaaaataaatatgattataatacggtaaaagatttt
gcgcacatcattgcatcattggttcatgaacagttaccggatacaacttctatagagcgt
tcattaagtaaacgtggaccacatatttatatagattacttgcaaaacaggagcgggcaa
acgctggcatctgtgtacagcctcaggcctgttgaaggagcaaatgcatctgccgcattg
gagtggaaagaagtaaatcataaactgcatccatcccagttcaacatacaaaacatgcct
gaaagattggaaaagaaacatgatctttttagtaaagtacttactacttcaaataacata
cagaaagctttgaaattgttgaatgtctaa

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