Paraburkholderia ginsengisoli: I6I06_04630
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Entry
I6I06_04630 CDS
T07246
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6I06_04630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_04630 (ligD)
Enzymes [BR:
pgis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6I06_04630 (ligD)
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6I06_04630 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
QQC64767
UniProt:
A0A7T4N3W0
LinkDB
All DBs
Position
1:complement(1060420..1063569)
Genome browser
AA seq
1049 aa
AA seq
DB search
MNDRLDLYHRKRRFDETPEPAGARASGKRAGRKAAPRAADEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPAGNYGAGSVIVWDRGT
WEPVGGAAEAARTYAAGKLKFRLHGEKLRGGWTLVRSHMRGSGDKEQWLLIKERDDEARD
ESEYDVLKKLPGSVMGGGASAGKSGKAAKARAAGKGEQKAVSPRARKAAASGEDEPGAET
ASTTSSKRGRKAASESVASPKAKAASNAATAAAKATASGKSKSASGGADPKRPDIVSTRT
AESLRELAASPSIEGAVKARLPAAFKPQLATLVDAAPPGDDWSYEIKFDGYRVLARIDRS
AKDGGVQVFTRAGNDWTAKFGKQVEALGALELDSAWLDGEAVVLDDNGVPSFQALQNAFD
SNRPQDIVIYLFDVPFLNGYDLRGVPLEQRRAILRALLDEVDDSVLRFSNDFEFSADELL
RSACDMALEGIIGKRRDSGYLSGRSQTWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLG
VYDGEGRLRYAGRVGTGFDAALLRSVKQALDAHETKRMPFADAPRERSRTPVHWVDPVLV
AECNFAEWTTEGIVRQASFVSLRDDKPARQIVKETSRQGGDVQEQTDSGVDAAPKKRGGA
KGGASGAGEKASSAKGAASSKTAVSEVAASKTARSKTTASKTASKTTASKTASKTTASKT
AASKTATAQTPAAKTATAKPATKTTTTTKSAPPAEVAGVRISHPDRVIDKSTGTRKIDLV
QYYESVADWMLPHLQDRPVSLVRAPEDIGGELFFQKHSQKLSIPNVTQHPGLDPGHPPLI
TVETIEALVGAAQMGTVEFHTWNAVAANIEKPDRVVFDLDPDAALGWERMIEAAQLTREL
LEELGLKSFCKTSGGKGLHVVVPLAKQAGWDEVKNFSQAVAQHMATMLPKYFSAKMGAQN
RKQKIFIDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVAATTSGDQWNIENLHERLA
SLRSDPWADYAKTRQRITAAMKKRLDEAQ
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacagactcgatctttatcatcgcaagcggcgcttcgacgaaacaccggagccc
gccggcgcgcgcgcgagcggcaagcgggccggtcgcaaggccgcgccgcgcgcagcggac
gaggcgctctcgtacgtgattcaggaacacgacgctcggcgattgcattacgacttccgg
ctcgaactgaacggcacgctgctgtcgtgggcggtgccgaaggggccgagcctcgatccg
tcggtgaagcggctcgcggtgcacgtcgaagatcatccggtcgaatacggttcgttcgaa
ggggagattcctgccggcaattacggcgcgggcagcgtgatcgtgtgggatcgcggcacg
tgggaaccggtcggcggcgcggcggaagcggcgcgcacctatgcggccggcaagctcaaa
ttcaggctgcacggcgagaagctgcgcggcggctggacgctggtgcgcagtcacatgcgc
ggcagcggcgacaaggagcagtggctgctgatcaaggagcgcgatgacgaggcgcgcgac
gagagcgagtacgacgtgctgaagaaactgccgggcagtgtgatgggcggcggggcatcg
gcgggtaaaagcggaaaggcggcgaaagcacgggcggcaggcaaaggtgaacagaaagcg
gtcagtccgcgtgcgcgtaaagccgcggcgagcggcgaggatgagcccggagcggaaacc
gcgtccaccacatcgagcaaacgcggacgcaaggccgcgagcgaatcggtcgcgtctcct
aaagcgaaagcggcttcaaatgcagccacagccgccgcgaaagcgaccgccagcggcaaa
tcgaagtcagcgtcgggcggcgccgatcccaagcggcccgacatcgtctctacacgtacc
gcggagtcgctgcgcgagctggcggcgtcgccgtcgatcgagggagccgtcaaggcgcgt
ctgccggctgcgttcaaaccgcaactggcgacgctcgtcgacgccgcgccccccggcgac
gactggtcgtacgagatcaagttcgacggatatcgcgtactcgcgcgcatcgaccgatct
gcgaaagacggcggcgttcaggtgttcacgcgcgcaggcaacgactggaccgcgaagttc
ggcaagcaggtcgaggcgctcggcgcactcgaactcgacagcgcatggctcgacggcgaa
gcggttgtgctcgacgacaacggcgtgccgagttttcaggcgctgcaaaacgcattcgat
tcgaaccgtccgcaggacatcgtcatttatctgttcgacgtgccgtttctgaacggctac
gacttgcgcggcgtgccgctcgaacagcgccgcgcgatcctccgcgcgctgctggacgag
gtcgacgacagcgtgctgcgcttctcgaacgacttcgagttcagcgccgacgaactgctc
cgaagcgcatgcgacatggcgctcgaagggatcattggcaagcggcgcgacagcggctat
ctgtcggggcgttcgcagacgtggatcaagctgaagtgccggcggcgccaggagttcgtg
atcggcggatattcggagccgagcggtagccgcgcggcattcggtgcgctgctgctcggc
gtctacgacggcgaagggcgcctgcgttacgccgggcgggtcggcaccggcttcgacgcg
gcgttgctgcgctcggtcaagcaggcgctcgatgcgcatgagacgaagcgcatgccgttt
gccgacgcgccgcgcgagcgcagccgcacgccggtgcattgggtggacccggtgctggtc
gccgaatgcaacttcgccgaatggacgacggagggcatcgtgcgccaggcgtcgttcgtg
agcttgcgcgacgacaaaccggcgcgtcagatcgtcaaggaaacatctcgtcagggaggc
gacgtgcaagagcaaacagatagcggagtcgatgccgcgccgaagaagcggggtggggcg
aagggtggtgcgagtggtgcgggtgagaaagcatcgtctgcgaagggtgctgcttcgtca
aagactgctgtctctgaggtggctgcttcgaagaccgcgcgctcaaagaccacggcttcg
aagactgcctcaaagaccacggcttcgaagactgcctcaaagaccacagcttcgaagact
gctgcatcaaagaccgcaaccgcgcagaccccggctgcgaaaaccgcaaccgcaaagccc
gctaccaaaaccaccaccaccacaaaatcagccccccccgccgaagtcgccggcgtccgc
atctctcaccccgaccgcgtcatcgacaaaagcaccggcactcgcaagatcgatctcgtg
cagtactacgagtccgtcgccgactggatgctgccgcatctgcaagaccggcccgtgtcg
ctggtgcgcgcgcccgaggacattggcggcgagctgttcttccagaagcacagccagaag
ctgtcgattccgaacgttacgcagcatcccggcctcgaccccggccatccgccgctgatc
accgtcgagacgatcgaggcgctggtcggcgccgcgcaaatgggcacggtcgaatttcac
acgtggaatgcggtcgccgcgaacatcgaaaagcccgatcgcgtcgtgttcgatctcgac
cccgacgcggcgctcggctgggagcgcatgatcgaagccgcgcaactcacgcgcgagctg
ctcgaagaactcggcctcaagtcgttctgcaaaacgagtggcggcaaggggctgcatgtc
gtcgtgccgctcgcgaagcaggccggctgggacgaggtgaagaatttctcgcaagccgtc
gcgcagcatatggcgacgatgctgccgaagtacttcagcgccaaaatgggcgcgcagaac
cgcaagcagaagatcttcatcgactacctgcgcaacaatcgcgggtccagcacggtggcc
gcattctccgcacgcgcacggcctggcctgggcgtatcggtgccgctcgcgtgggacgag
gtggcggccaccacgagcggcgatcaatggaacatcgagaacctgcacgagcggctcgcg
agtctgcgcagcgatccgtgggcggactatgcgaagacgcgtcagcgcatcaccgccgca
atgaaaaaacgcctggacgaagcgcagtga
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