KEGG   Paraburkholderia ginsengisoli: I6I06_04630
Entry
I6I06_04630       CDS       T07246                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pgis  Paraburkholderia ginsengisoli
Pathway
pgis03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pgis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I6I06_04630 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pgis03400]
    I6I06_04630 (ligD)
Enzymes [BR:pgis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I6I06_04630 (ligD)
DNA repair and recombination proteins [BR:pgis03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I6I06_04630 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S HC2
Other DBs
NCBI-ProteinID: QQC64767
UniProt: A0A7T4N3W0
LinkDB
Position
1:complement(1060420..1063569)
AA seq 1049 aa
MNDRLDLYHRKRRFDETPEPAGARASGKRAGRKAAPRAADEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPAGNYGAGSVIVWDRGT
WEPVGGAAEAARTYAAGKLKFRLHGEKLRGGWTLVRSHMRGSGDKEQWLLIKERDDEARD
ESEYDVLKKLPGSVMGGGASAGKSGKAAKARAAGKGEQKAVSPRARKAAASGEDEPGAET
ASTTSSKRGRKAASESVASPKAKAASNAATAAAKATASGKSKSASGGADPKRPDIVSTRT
AESLRELAASPSIEGAVKARLPAAFKPQLATLVDAAPPGDDWSYEIKFDGYRVLARIDRS
AKDGGVQVFTRAGNDWTAKFGKQVEALGALELDSAWLDGEAVVLDDNGVPSFQALQNAFD
SNRPQDIVIYLFDVPFLNGYDLRGVPLEQRRAILRALLDEVDDSVLRFSNDFEFSADELL
RSACDMALEGIIGKRRDSGYLSGRSQTWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLG
VYDGEGRLRYAGRVGTGFDAALLRSVKQALDAHETKRMPFADAPRERSRTPVHWVDPVLV
AECNFAEWTTEGIVRQASFVSLRDDKPARQIVKETSRQGGDVQEQTDSGVDAAPKKRGGA
KGGASGAGEKASSAKGAASSKTAVSEVAASKTARSKTTASKTASKTTASKTASKTTASKT
AASKTATAQTPAAKTATAKPATKTTTTTKSAPPAEVAGVRISHPDRVIDKSTGTRKIDLV
QYYESVADWMLPHLQDRPVSLVRAPEDIGGELFFQKHSQKLSIPNVTQHPGLDPGHPPLI
TVETIEALVGAAQMGTVEFHTWNAVAANIEKPDRVVFDLDPDAALGWERMIEAAQLTREL
LEELGLKSFCKTSGGKGLHVVVPLAKQAGWDEVKNFSQAVAQHMATMLPKYFSAKMGAQN
RKQKIFIDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVAATTSGDQWNIENLHERLA
SLRSDPWADYAKTRQRITAAMKKRLDEAQ
NT seq 3150 nt   +upstreamnt  +downstreamnt
atgaacgacagactcgatctttatcatcgcaagcggcgcttcgacgaaacaccggagccc
gccggcgcgcgcgcgagcggcaagcgggccggtcgcaaggccgcgccgcgcgcagcggac
gaggcgctctcgtacgtgattcaggaacacgacgctcggcgattgcattacgacttccgg
ctcgaactgaacggcacgctgctgtcgtgggcggtgccgaaggggccgagcctcgatccg
tcggtgaagcggctcgcggtgcacgtcgaagatcatccggtcgaatacggttcgttcgaa
ggggagattcctgccggcaattacggcgcgggcagcgtgatcgtgtgggatcgcggcacg
tgggaaccggtcggcggcgcggcggaagcggcgcgcacctatgcggccggcaagctcaaa
ttcaggctgcacggcgagaagctgcgcggcggctggacgctggtgcgcagtcacatgcgc
ggcagcggcgacaaggagcagtggctgctgatcaaggagcgcgatgacgaggcgcgcgac
gagagcgagtacgacgtgctgaagaaactgccgggcagtgtgatgggcggcggggcatcg
gcgggtaaaagcggaaaggcggcgaaagcacgggcggcaggcaaaggtgaacagaaagcg
gtcagtccgcgtgcgcgtaaagccgcggcgagcggcgaggatgagcccggagcggaaacc
gcgtccaccacatcgagcaaacgcggacgcaaggccgcgagcgaatcggtcgcgtctcct
aaagcgaaagcggcttcaaatgcagccacagccgccgcgaaagcgaccgccagcggcaaa
tcgaagtcagcgtcgggcggcgccgatcccaagcggcccgacatcgtctctacacgtacc
gcggagtcgctgcgcgagctggcggcgtcgccgtcgatcgagggagccgtcaaggcgcgt
ctgccggctgcgttcaaaccgcaactggcgacgctcgtcgacgccgcgccccccggcgac
gactggtcgtacgagatcaagttcgacggatatcgcgtactcgcgcgcatcgaccgatct
gcgaaagacggcggcgttcaggtgttcacgcgcgcaggcaacgactggaccgcgaagttc
ggcaagcaggtcgaggcgctcggcgcactcgaactcgacagcgcatggctcgacggcgaa
gcggttgtgctcgacgacaacggcgtgccgagttttcaggcgctgcaaaacgcattcgat
tcgaaccgtccgcaggacatcgtcatttatctgttcgacgtgccgtttctgaacggctac
gacttgcgcggcgtgccgctcgaacagcgccgcgcgatcctccgcgcgctgctggacgag
gtcgacgacagcgtgctgcgcttctcgaacgacttcgagttcagcgccgacgaactgctc
cgaagcgcatgcgacatggcgctcgaagggatcattggcaagcggcgcgacagcggctat
ctgtcggggcgttcgcagacgtggatcaagctgaagtgccggcggcgccaggagttcgtg
atcggcggatattcggagccgagcggtagccgcgcggcattcggtgcgctgctgctcggc
gtctacgacggcgaagggcgcctgcgttacgccgggcgggtcggcaccggcttcgacgcg
gcgttgctgcgctcggtcaagcaggcgctcgatgcgcatgagacgaagcgcatgccgttt
gccgacgcgccgcgcgagcgcagccgcacgccggtgcattgggtggacccggtgctggtc
gccgaatgcaacttcgccgaatggacgacggagggcatcgtgcgccaggcgtcgttcgtg
agcttgcgcgacgacaaaccggcgcgtcagatcgtcaaggaaacatctcgtcagggaggc
gacgtgcaagagcaaacagatagcggagtcgatgccgcgccgaagaagcggggtggggcg
aagggtggtgcgagtggtgcgggtgagaaagcatcgtctgcgaagggtgctgcttcgtca
aagactgctgtctctgaggtggctgcttcgaagaccgcgcgctcaaagaccacggcttcg
aagactgcctcaaagaccacggcttcgaagactgcctcaaagaccacagcttcgaagact
gctgcatcaaagaccgcaaccgcgcagaccccggctgcgaaaaccgcaaccgcaaagccc
gctaccaaaaccaccaccaccacaaaatcagccccccccgccgaagtcgccggcgtccgc
atctctcaccccgaccgcgtcatcgacaaaagcaccggcactcgcaagatcgatctcgtg
cagtactacgagtccgtcgccgactggatgctgccgcatctgcaagaccggcccgtgtcg
ctggtgcgcgcgcccgaggacattggcggcgagctgttcttccagaagcacagccagaag
ctgtcgattccgaacgttacgcagcatcccggcctcgaccccggccatccgccgctgatc
accgtcgagacgatcgaggcgctggtcggcgccgcgcaaatgggcacggtcgaatttcac
acgtggaatgcggtcgccgcgaacatcgaaaagcccgatcgcgtcgtgttcgatctcgac
cccgacgcggcgctcggctgggagcgcatgatcgaagccgcgcaactcacgcgcgagctg
ctcgaagaactcggcctcaagtcgttctgcaaaacgagtggcggcaaggggctgcatgtc
gtcgtgccgctcgcgaagcaggccggctgggacgaggtgaagaatttctcgcaagccgtc
gcgcagcatatggcgacgatgctgccgaagtacttcagcgccaaaatgggcgcgcagaac
cgcaagcagaagatcttcatcgactacctgcgcaacaatcgcgggtccagcacggtggcc
gcattctccgcacgcgcacggcctggcctgggcgtatcggtgccgctcgcgtgggacgag
gtggcggccaccacgagcggcgatcaatggaacatcgagaacctgcacgagcggctcgcg
agtctgcgcagcgatccgtgggcggactatgcgaagacgcgtcagcgcatcaccgccgca
atgaaaaaacgcctggacgaagcgcagtga

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