Pedobacter gandavensis: QG516_18815
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Entry
QG516_18815 CDS
T09013
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgj
Pedobacter gandavensis
Pathway
pgj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QG516_18815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgj03021
]
QG516_18815
Transcription machinery [BR:
pgj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QG516_18815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
GerE
Sigma70_ECF
HTH_23
HTH_28
HTH_5
KIP1
DUF1694
HTH_40
HTH_20
HTH_24
Motif
Other DBs
NCBI-ProteinID:
WGQ08583
LinkDB
All DBs
Position
4454864..4455430
Genome browser
AA seq
188 aa
AA seq
DB search
MSKHSSDLNNLISHIALYDSESAYKQFFKYLFPVLYRFSYCLLKSKELSEEVASDVMITL
WKNRKNLPELENVKVYALVIARNLSLNVLNKHSRHELVSIDDIEIEVALDSLNPEQLLIN
GELKKRLEQATQSLPDKCKMVFKLIKEDGLSYKETASLLNISVKTVDAHLVTALKKLALV
LHMEVNLL
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcattcatccgacttaaataacctgattagtcatattgctttgtatgatagc
gaaagtgcatacaagcaattttttaaatacttgtttcctgttttataccgtttcagctat
tgcttgttgaaatctaaagaactatccgaagaagtagctagtgacgtgatgattacgctc
tggaaaaatagaaaaaatttaccagagttggagaatgtaaaggtatatgccttggtgatt
gcgcggaacctgtctttgaatgtgttaaataagcactccaggcatgaactggtgtctatt
gatgatatcgagatcgaagtggcactggactccttaaatccggaacagttactgatcaat
ggggaactaaagaaaaggctggaacaagccacacaatctttaccagataagtgtaagatg
gtgttcaaactgatcaaagaggatggtcttagctataaggaaactgccagtcttttgaat
atttcagtgaagactgtagatgcgcatttggtgaccgccttaaaaaaactggcattagtg
ctgcacatggaagttaacctgttataa
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integrated database retrieval system
