Phaeobacter inhibens 2.10: PGA2_c09670
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Entry
PGA2_c09670 CDS
T02193
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgl
Phaeobacter inhibens 2.10
Pathway
pgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA2_c09670 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgl03019
]
PGA2_c09670 (deaD)
03009 Ribosome biogenesis [BR:
pgl03009
]
PGA2_c09670 (deaD)
Enzymes [BR:
pgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGA2_c09670 (deaD)
Messenger RNA biogenesis [BR:
pgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGA2_c09670 (deaD)
Ribosome biogenesis [BR:
pgl03009
]
Prokaryotic type
rRNA helicases
PGA2_c09670 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFO86976
UniProt:
A0AA86D764
LinkDB
All DBs
Position
1067607..1069763
Genome browser
AA seq
718 aa
AA seq
DB search
MPSGGAPRSKRNEILKTALEQALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTV
GFGLAMAPTLLGDAEKLDRADLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGM
DMRDERRALERGAHIVVATPGRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFI
LGESPEDRRTLMFSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVE
NAVINVLRFHESPNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRD
GRARVCVATDVAARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKA
KGKALRLLRSAKITAETSPAPSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFS
PEQLAVAYLRLFHDRHSAPEELSDPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLL
PALCNAGGLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDL
PKSPRPQGRDGGGFRDDKRGHRGQDRGDRGSERGERKPYGDKPRSDKPRGDKPSYSDKPR
GEKSYGDKPRASKPYGDKPRGDKPAYGDKPRFDKPKRTGEGGKATVTARGSSDRGATPSA
PAKPAVPGKPKGDWSNPGKSGRKGPPPPKGKPNSKKNKARAVVSGKPGGSARPQRKGS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgccctctggcggcgcgccccgcagcaagcgaaatgaaatcttgaaaacagcactcgaa
caagcgcttcaggcgcgcggctacgagcatttgacacccgtgcaagaggccgtcaccgca
gccgagctggatcagtccgaccttctggtgtcggcacagaccggatccggcaaaaccgta
ggctttggcctggcgatggcgcccacattgttgggcgacgccgagaaactggaccgtgcc
gatctgccgctggcattggtcattgcgccgacgcgcgaactggcgttgcaggtgaaacgc
gaactgggctggctctatgccgaggccggcgcgcatgtggtctccaccgttggtggtatg
gatatgcgcgacgaacggcgcgcgttggaacgtggcgcccatattgttgtggcaacgccc
ggtcgcctgcgcgatcacatcatgcgtggctctatcaacctgtcgcaggtccgcgccgtg
gtgctggacgaagccgatgagatgctggatctgggctttcgtgaggatctggagttcatt
ctgggcgaatccccggaagaccgccgcaccctgatgttctcggcaactgtgccgactggt
attgcgcgtctggctgagacctatctcaaggatcatcagcggatcaaaaccgtggcggaa
gcctcgcagcacgcggatattgaatatcagatgctggccgtggcgcagcgggatgttgag
aacgcggttatcaatgttctgcgctttcacgagtcgcccaatgcgattgtgttctgcaac
acccgtgcggtggtgaaccggatgaccacgcggctgagcaatcgcggattttccgtggtt
gccctgtcgggcgagctgtctcaggcggagcgcagcaacgcactgcagtctctgcgggac
gggcgcgcgcgggtttgtgtggcaacagatgttgcggcgcgcggtatcgatctgccgaaa
ctggacctggtgattcatgcggatctgccgtccagccatgagacgctgttgcaccgctcg
ggccggaccggtcgtgccgggcgtcagggtgtgtcggcgttgattgtaccgccaaaggcc
aagggcaaggccctgcgcctgctgcggtctgccaagatcactgccgaaaccagcccggcg
cccagtgccgatgatgtccggacccgcgactttgagcgccttctgggtgacaaggcctgg
agtgaaccggtcagcgaaaacgagaccgccccggtggcggagctggtcgagcggttctcg
cccgagcagctggcggtcgcctatctgcgtctgttccacgatcgccacagcgcccccgag
gagctgagcgatccgcagcacgacaagcgcgagcgtgaagagcgtgcgccctttggtccc
tctgtgtggtttgcggtcagcggtggccgcaaggccggtgccgaaccgcgtcggctgctg
ccagcgctgtgcaatgccggtggtctgactaaggatgatatcggagcgatccgggttcag
tttgatcaaagctacgtggaagtgcgcgaaagcagcgccgaaagcttctggggcgcggtg
aaacacgacggtctggaagagggggcaaatgtcacccgtctggacaaggcaccggatctg
cccaaatcgccacgcccacagggtcgtgatggtggtggtttccgcgatgacaaacgcggc
caccgtggacaggatcgcggagatcgcggcagtgaacgcggtgagcgcaagccctatggc
gataagccccgttctgacaaaccgcgcggcgacaagccgtcttacagtgataagccacgt
ggcgaaaagtcatatggtgacaagccgcgtgccagcaaaccctatggggataaaccgcgt
ggcgacaaacctgcctatggcgacaagccgcgtttcgacaaacccaaacgcacaggtgag
ggcggcaaggccacggtgaccgcgcgcggatcatcggaccggggggcaacgccgtcggcg
cctgccaaacctgcggttccgggcaagcccaagggcgattggtccaatccggggaaatcc
ggccgcaaggggccacccccgccgaagggcaagcccaacagcaagaaaaacaaggcccgt
gcagtcgtttccgggaaacccggcggcagcgcacggcctcagcgcaagggcagctga
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