Paenibacillus graminis: PGRAT_00030
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Entry
PGRAT_00030 CDS
T03325
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pgm
Paenibacillus graminis
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgm03032
]
PGRAT_00030 (gyrB)
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_00030 (gyrB)
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PGRAT_00030 (gyrB)
DNA replication proteins [BR:
pgm03032
]
Prokaryotic type
DNA Topoisomerases
PGRAT_00030 (gyrB)
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PGRAT_00030 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
HVO_2248
Motif
Other DBs
NCBI-ProteinID:
AIQ66220
UniProt:
A0A089M1C9
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All DBs
Position
4502..6412
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AA seq
636 aa
AA seq
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MSMNQPTYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDR
IQVKIHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGV
GISVVNALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIIGDTDETGTTTTFHPDPEIFTE
TTVFEYTTLLTRIRELAFLNKGIELSLLDERTGVSNVFKYEGGIVEYVKYLNEKKEALHE
EPIYVEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYAR
KTGVIKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFGEKLQ
EFLEENPAVSRRVLEKSMQASRAREAARKARELTRRKSALEVSALPGKLADCSSKDASIS
ELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI
SDDFDLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIER
NKVIRYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIE
DAILADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgaatcaaccgacatatgatgagagccagattcaggtactggaagggctggag
gcagttcggaaacgtcccggcatgtacatcggttctactagcgccaaaggtctgcatcat
ttggtctgggaggttgtcgataacagtatcgatgaggcgctggcaggctattgcgaccgg
attcaagtgaagattcatgaggataacagtattacagtaatagataatggacggggtatc
cctgtcggcgagaatgcgaagctcaaaaaatcgacgctcgaagtcgtcatgacggtcctg
catgctggggggaaattcggcggcggcggatataaagtatcaggcggattgcacggtgta
gggatttccgttgtaaatgccctgtccgagaaggttgttgtgaacgtcaagcgtgacggc
cacatctaccagcaggaatatagacgcggtgcgccgcagtatgatatcaagatcattggt
gataccgatgagacaggaacaacaacaacgtttcatccggatccagagattttcaccgaa
accacagtatttgaatatacgacattgctcacacgtatccgtgaattggcctttcttaac
aagggcattgagctttcactgctcgatgaacgcactggtgtatctaatgttttcaaatac
gaaggcggtattgttgagtatgtaaagtatctgaatgagaaaaaagaagcgctgcatgag
gaaccgatctacgtagaaggttcccgcgatatgattgcggtggaagttgctctgcagtat
aacgattcctatacagagaacatttactcttttgccaataatattaatacgcatgagggc
gggacccatgaatccggcttcaaaagcgcattaacccggatcatcaacgactatgcccgt
aaaacgggagtcattaaggacagcagctccaatcttaccggcgatgatgtgcgtgaaggg
ttgacagcgattatttctgttaagattccagaaccgcaatttgaaggccaaaccaagacc
aagctgggcaacagtgaagtccgcggtattgtagaatctctattcggagagaagctgcag
gagtttttggaagagaatccggcagtttcccggcgtgtgctggagaaatccatgcaggct
tcccgtgcccgtgaggcggcccgtaaagcccgtgagctgactcgccgcaaaagtgcactt
gaggtaagcgccctgccggggaaactggctgactgctcctctaaggatgcctccatcagc
gagctgtacatcgtcgaaggggactctgcaggcggttctgccaagcagggccgtgaccgt
catttccaggctattctgccgctccgcgggaagatcctgaacgttgaaaaagcgcggctt
gaccgtatattgtccaatgccgaaatacgggcgattatcaccgctctgggaaccggcatc
agtgatgattttgatctgtccaaagctcgttaccataaggttgttatcatgaccgatgcg
gatgtcgatggtgcccatatcagaacactgctgctgaccttcttttaccgctacatgcgg
aagattatcgaagcgggctatatttatatcgcccaaccgccgctgtttaagattgagcga
aataaggtcatccgctatgctcaaaccgaaaaggaacgtgatgagattattgccagcttc
ggcgagaatgttaaagtcaacgttcaacggtataaaggtcttggggaaatgaatgcggct
cagctgtgggatacaactatggaccctgagagccgcatgatgcttcaggtcaccattgag
gatgctattctcgcagacggaatctttgatacgctgatgggcgacaatgtcgagccgcgg
cgggaatttattcaggagcatgcacaatccgtgcgtaacctggatatttaa
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