Paenibacillus graminis: PGRAT_00635
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Entry
PGRAT_00635 CDS
T03325
Name
(GenBank) recombinase RecR
KO
K06187
recombination protein RecR
Organism
pgm
Paenibacillus graminis
Pathway
pgm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PGRAT_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_00635
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PGRAT_00635
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGRAT_00635
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Toprim_4
RecR_HhH
Toprim
RecR_C
RecR_ZnF
HHH_8
HHH_5
HHH
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
AIQ66330
UniProt:
A0A089M1Q5
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All DBs
Position
132937..133536
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AA seq
199 aa
AA seq
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MYYPEPLAKLIEAFTRLPGIGPKSAARLAFHVLNMKEDEVIDFAKALVSVKRNLHYCSVC
CNITDTDPCRICQDKTRDASVICVVQDSKDLVAIERTKEFDGYYHVLQGAISPMEGIGPD
DIRLKELLTRLSDERVKELIMATNPNIEGEATAMYISRLVRPFEIKITRIAHGLPVGGDL
EYADEVTLSKALEGRRELF
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
ttgtattatccagaaccgctagccaagctgatcgaagcttttacgcgtttgcccggaatt
ggcccgaagtcagccgcccggcttgcttttcatgtgctgaatatgaaggaagacgaggtt
attgattttgccaaggcgctggtcagcgtcaaacgcaatcttcattactgttcggtttgc
tgcaatattacggataccgatccctgccggatctgtcaggacaaaacccgcgatgcatcc
gtaatctgtgtagtccaggattccaaggacctggtggctattgaacgaaccaaggaattc
gacggctattaccatgtgctgcaaggggcaatttcaccaatggagggcataggtccggat
gatatccgtctgaaggagctgttgacccgtctgagcgatgaaagagtgaaggagcttatt
atggccaccaaccccaatattgagggtgaagccacagctatgtatatctcccgcctggtt
cggcctttcgagatcaaaatcaccaggatagcccatgggctgcctgtaggcggcgacttg
gagtatgcggatgaggttaccctgtccaaggccctcgaaggccgccgtgagctgttctaa
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