Paenibacillus graminis: PGRAT_05830
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Entry
PGRAT_05830 CDS
T03325
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PGRAT_05830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_05830
Enzymes [BR:
pgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PGRAT_05830
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PGRAT_05830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
AIQ67209
UniProt:
A0A089NDZ2
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All DBs
Position
complement(1318330..1319214)
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AA seq
294 aa
AA seq
DB search
MPKTIRGSITVEGQEIAITNPEKLLWPEQGITKRIYLQKLAALSPYLLRYSRDRLLTVIR
YPHGVPGMSFYQKNAPEPLPDYVRTATHDNITYIVLQGLPDLLWLGNMAALEFHPSLHYV
GSSLPCEWMIDLDPSLEVEPRIMEAAAVVGEVLQSLGIASVPKTSGATGVQIIVPIRPGV
TFDGLRRIGHFVGRYVTEKRPDLFTLERLKKNRGDNIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQHNVSPADFHLLNIENRLSIMGDLIAKVPPQPVEALIPKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaccatcaggggctccattaccgtcgaaggacaggaaattgccataacgaac
ccggagaaattgctgtggccggagcaaggcattaccaaacggatttatctgcaaaagctg
gccgccctctccccctatctgctgcgttattcccgtgaccggctgttgaccgtgatccgc
tatccgcacggtgttcctggcatgtccttttaccagaaaaatgcgccggagcctttgccg
gattatgtacgtacggcaactcacgacaacattacttatatcgtcctgcaagggctgccc
gacctgctctggctggggaatatggccgccctggagtttcatccctcactgcattatgtc
ggcagcagtttgccctgcgaatggatgattgacctggacccgtccctcgaagtcgagccg
cggattatggaagcggctgctgttgtaggcgaggtactgcagtcgctcgggattgcctca
gtccccaaaacctcaggagcaaccggggtgcaaattatcgttcctatccggcctggagtc
actttcgatggcctgcgccggattgggcactttgtcggccggtatgtcactgagaaacgc
ccggatctgttcacgctggagcggctgaagaagaaccggggcgacaatatttattttgat
taccttcagcactatggcggcaaaacgctcgctgctccgtacacgccccgtgcccggccg
ctggccacggtctccactcctcttttatgggaagaggtccagcacaatgtttcgcctgcg
gatttccatctgctcaacattgagaaccgtctgagcatcatgggtgatctgattgcgaag
gtgccgccgcagccggtggaagctcttatccccaagcttccttaa
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