Paenibacillus graminis: PGRAT_05840
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Entry
PGRAT_05840 CDS
T03325
Name
(GenBank) DNA repair protein
KO
K10979
DNA end-binding protein Ku
Organism
pgm
Paenibacillus graminis
Pathway
pgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PGRAT_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_05840
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PGRAT_05840
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
CDC24_OB3
Motif
Other DBs
NCBI-ProteinID:
AIQ67211
UniProt:
A0A089M0A5
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All DBs
Position
complement(1320202..1321173)
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AA seq
323 aa
AA seq
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MHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVCDKEVAWEEI
GKGYEYEKGKFVLFDKEELDQLTEESSKSITILDFVDLTEIDPIYFQKTYYLSPDQAGAN
AYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIYYPDEVRPVSQVPGLPE
PGIVNDKELDMAKLLISQLSMPFEPGKYTDDYRQRMLDLITHKIAGEEFHIAPARQESNV
IDLMAALQASIEAVQHIPADPGPSAASATTKPKAGAVSRKKTVAAKPDKTADGVPVVDEA
TGPIPVISPKPKRRTAKSKESGA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgcataccgtttggaaaggggccatcagcttcgggcttgtccatgttccggtcaaaatg
ttctccgctaccgaggacaaagacatctcgctgcgctatatccataaggagtgcggcagc
ccgctgtcgtatgtgcgcaaatgtcccgtctgcgacaaggaggtggcttgggaggaaatc
ggcaagggctacgaatatgaaaagggaaagtttgtcctttttgacaaagaagagctggac
cagctgacggaggagagcagcaagagcattaccattttggattttgtggacctgaccgag
atcgacccgatttatttccagaaaacctattacctgtccccggatcaggcgggagccaat
gcgtatcgtctgctgatggaggccatgcgccagaccggaaagatcggaattgccaaaatt
tccatccgctccaaaagcagcctcgccgccatccgcgtgctggctgactgcctggcaatt
gaaaccatctattatcccgatgaagttaggcctgtatcccaggttccaggactgccggag
cccggcatcgtaaacgacaaggagctggatatggccaagctgctgatttcacagttgtcg
atgccgtttgagccgggcaaatacaccgatgactaccgccagcgcatgcttgatctgatt
actcacaagattgccggtgaagagttccatattgctcccgcccgccaggagagcaatgta
attgacttgatggctgcgcttcaagccagtatcgaagccgtgcagcatattcctgccgat
cccggcccatctgcggcttccgccacaaccaaaccgaaagccggagcggtgtccaggaag
aaaacagtcgcggccaaacccgataaaaccgctgacggcgttcccgtcgttgacgaggct
accggaccgattccggtcatttcgcccaaaccgaaacggcgcacagccaagagtaaagaa
tcgggggcttaa
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