Paenibacillus graminis: PGRAT_10910
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Entry
PGRAT_10910 CDS
T03325
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PGRAT_10910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_10910
Enzymes [BR:
pgm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PGRAT_10910
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PGRAT_10910
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PGRAT_10910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AIQ68074
UniProt:
A0A089NGD4
LinkDB
All DBs
Position
2583866..2584708
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AA seq
280 aa
AA seq
DB search
MPELPEVETVKRTLNALITGKQIQNVTVRLPRIIQRPDDIQAFANMLAGHTVVQVERRGK
FLRFVLDGLVMVSHLRMEGRYGLYQGEEPLDKHTHVIFHFTDGTELRYTDVRQFGTMHLF
QPGEDLLLPPLKKLGEEPLAPSFTPERFKAIVSGKSTKIKPLLLNQEYVVGIGNIYVDEA
LHRARIHPETGAKALTDSQLDLLHHAIVATLTEAVNAGGSSVKSYVNGQGESGSYQHQLL
IYGRKDQPCASCGTLIEKSVVGGRGTHYCPRCQPQAKAEK
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccggaagtagaaacggtcaaaagaacactaaatgccttgattacaggc
aagcagatacagaacgtcaccgtccggctgccgcggatcattcagcgcccggatgatatt
caggcttttgccaacatgctggcaggccatacagtagtgcaagtggaacgaagagggaag
tttttacggtttgtgctggatggtctggtgatggtgtcccatctgcggatggaaggccgg
tacggcctttatcagggggaggagccgctggacaagcatacccatgtgattttccatttt
actgacggcacggagctgcggtacacggatgtgcgccagttcggcaccatgcatctgttc
cagccgggagaggatctgttgcttccgccgctgaagaagctgggggaggagccgctggca
ccttcttttacaccggaacggttcaaggcaattgtctcgggaaaaagcaccaaaatcaaa
ccgctgctgctcaaccaggaatatgtcgtcggcatcggcaatatctatgtagatgaggcg
ctgcaccgtgcccgcattcatccggaaacaggcgccaaagcgcttaccgacagtcagctg
gatctgctgcatcatgcaattgtcgcaaccttgacagaggctgtaaatgcaggaggctcc
tccgtcaaatcgtatgtcaacggccagggagagagcggaagctaccagcatcagctgctt
atttacggacgcaaggatcagccttgtgccagctgtggaacactgatcgagaagagcgtg
gtgggaggcagaggcacgcattattgtccaagatgccagccgcaagccaaagccgaaaag
taa
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