Paenibacillus graminis: PGRAT_11960
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Entry
PGRAT_11960 CDS
T03325
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGRAT_11960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgm03019
]
PGRAT_11960
03009 Ribosome biogenesis [BR:
pgm03009
]
PGRAT_11960
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGRAT_11960
Messenger RNA biogenesis [BR:
pgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGRAT_11960
Ribosome biogenesis [BR:
pgm03009
]
Prokaryotic type
rRNA helicases
PGRAT_11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AIQ68248
UniProt:
A0A089M9Q3
LinkDB
All DBs
Position
2804158..2805804
Genome browser
AA seq
548 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQSILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEGEGGELNEYKGIAIQLLEQYDSVQLLSAA
MKLLTGDNKDAQVELTPEDPIRAKRRGGKNDIRSGRKPNGGYGGNRTGSGSGGGYRGNRD
NASGGSRGGYSSGYGGGSGSGGYGGGYKGNRDSGTGRDGAAGRSGERKPSTRPSSTSTRP
AKREDYDI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcttggagccaaaagtgcttcaagcaatcacagagcta
ggatttgaggaagcaacacccattcaggagcaggcgattccgatcgcattgaccggatcg
gatcttatcggccaggcacagaccggtacaggtaaaaccgctgctttcgggattcccctc
atctccaaaatcgcccgggaagaagagaaaatccttgcacttgttatgacgccgacacgt
gagcttgctattcaggtagctgaagaaatcggcaaattgacccgtttcaaaggactgcgc
tccctggccatctacggcgggcaggatatcggccgccagatccgcggactgaagaagaaa
ccgcagatcattatcggtacccctggccgtctcctggaccacattaaccgcaaaaccatc
cgcctcgatgatgtccagactattgtactggacgaagcagacgaaatgctggatatgggc
ttcatggaagacatccagtccattctcaagcttgtaccggaagaacgccagaccatgctg
ttctcagctacaatgcctcctaatattcaacgtcttgcccagcagtttctgaagaatccg
cagcatgtttctgtgataccgaaacaaatcagcgcacctctgatcgatcaggcatatatt
gaggttcctgagcgccagaagttcgaagccctgagccgcctgattgacatggaatcccct
gatttggcaatcgtcttcggccgcaccaagcgccgggttgacgagcttgctgaaggattg
caaaaacgcgggtattccgcagacggcctgcatggcgacttgtcccagaatcagcgggat
gccgtaatgcgtaaattccgtgacggcagcattgatgtgcttgtggctacagacgttgca
gcccgcggactcgacgtttccggtgtaactcatgttatcaactttgaccttccgcaggat
cctgagagctatgtacaccgtatcggccgtacaggccgtgcgggcaaggaagggactgcc
tggtctttcgtgacaccccgcgaaatggatcacctgcatctgattgaacgtgttacacgt
caccgtattacacgcaaaccgctgccgacaatggctgaggctatcgaaggcaagcaacgc
attacggctgaacgtttgctggcaatggtcgagggcgaaggcggcgaattgaacgaatac
aaaggcatcgctattcaattgcttgagcaatatgattcggtgcagctgctgtcagcggca
atgaagctccttaccggcgacaacaaggatgcccaggttgaactgacacctgaagatccg
atccgtgccaaacgccgtggcggcaagaatgatatccgcagcggacgcaagccgaacgga
ggatatggcggtaaccgcacaggatcaggcagcggcggcggataccgtggcaaccgtgac
aatgcaagcggcggcagccgtggcggttacagcagtggatacggcggcggaagtggcagc
ggcggatatggcggcggctacaaaggcaaccgcgattccggtacaggccgtgatggagct
gctggacgcagcggagaacgcaaaccatctacgcgtccaagcagcacaagcacacgtccg
gctaagcgcgaagattacgatatctaa
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