Paenibacillus graminis: PGRAT_14725
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Entry
PGRAT_14725 CDS
T03325
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pgm
Paenibacillus graminis
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgm03019
]
PGRAT_14725
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PGRAT_14725
Messenger RNA biogenesis [BR:
pgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PGRAT_14725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Rv0078B
Motif
Other DBs
NCBI-ProteinID:
AIQ68728
UniProt:
A0A089MB71
LinkDB
All DBs
Position
3374791..3377286
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AA seq
831 aa
AA seq
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MKQLPIAQVLPELKTILNSSAAAVLIAEPGAGKTTGTPPAFLDEPWMAGKTILMLEPRRL
AARSAASYMASLLGERAGQTVGYRMRNDTKVGPDTRIVVVTEGVLTRMLQSDPSLGDVGL
VIFDEFHERSLHADLGLALTLEAQAVLREDLRILIMSATLDSGRVSAMLGGAPVVDCPGR
NFPVETVYLPGSGDRQLEHSAAAAVRRALAEQPGDVLVFLPGEREIRRTERELESSALPP
GTVLRPLYGQLPQAQQDAAVAPAIPGERKVVLATSIAETSLTIEGVRTVIDTGLRRTQVF
SPRTGMPRLATVPVSKASADQRRGRAGRTAPGVCYRLWSPEEHARLPDDTVPEIMETDLA
QLALELALWGAPAPEALLWLDTPPAAPYAQGLALLRQLGALDAGGAITPHGRSMAALGAH
PRVAHMLLRAAELGAAPLACRLAALLQERDLLRGPAALDSDITLRVEALLRYERSAADSG
GADPAALRAVQRESRSFLAQLQAAPGTLPDNISLTGLLLSFAYPDRIGQKRGDGAFLLTG
GRGAAMREGQPLTRSPYIVAAGIDDRAGQSRIMLAAELPEADLLKHHKGSLQEQREVYWD
KESGSVQARRRTLLGALVVKETSHERPAAEEAEEVLLRVLSEEGLTLLPWDKGTVQLRQR
MEFLHRLRADFPDVSEEALLSSLQEWLQPFIQGMRNLRDLQRVPVSRALEGLLDWNSRKL
LDREAPTHITVPSGSRIPVDYSNPAAPVLAVRLQEMFGQVDTPRIGGGKVAVLLHLLSPA
RRPVQVTADLASFWRSTYFEVKKDLKGRYPKHYWPDDPLQAAPTNRTRPAR
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttccgattgcccaggtgctccctgagctgaaaaccatattgaatagctct
gccgccgccgttctgattgccgagccgggcgccgggaaaacgacagggacgcctccggca
tttttggatgagccttggatggctggcaaaaccatattaatgctggagcccagaaggctg
gccgcccgctcggccgccagttacatggcgtccttgctgggagaacgtgccgggcaaaca
gtaggataccgtatgcgcaatgatacgaaggttggcccggatacacggatcgttgttgtc
acagaaggtgtgttgacccggatgctgcaaagtgatccgtcgcttggggatgtagggctt
gtgatatttgacgagttccatgaacgcagccttcacgcggatctcgggctggcgttgaca
ctggaagcgcaagctgtgctgcgggaggatctgcggattcttatcatgtcggcgaccctc
gacagcggacgggtctcggctatgctcggtggagcccctgtagtggactgcccaggccgg
aactttccggtggaaacggtttatctgccaggctcaggagacaggcagctggagcattcc
gctgccgcagcggtccgccgcgcgcttgccgagcagccgggagatgtgctggtttttctg
cccggcgagcgtgaaatccggcggactgagcgtgaactggagagcagtgctctccctccg
ggcacggtgcttcgtccgctttatgggcagctgccgcaggctcagcaagatgccgccgtg
gctcccgctataccaggcgaacgcaaggtcgtgctggctacttccattgccgagaccagt
ttgacgatcgaaggggtacggactgtaattgatacagggctgcggcggacccaggtattt
tcgccgcggacaggcatgccccgactggcgacggttccggtatccaaggcttccgccgac
cagcggcggggccgcgcgggacgcactgcgcctggagtatgttaccggctgtggagcccg
gaggagcatgcccgtcttccggatgacaccgtcccggaaatcatggagaccgacctggcg
cagctcgccctggagctggcgctgtggggcgcgcctgccccggaggcgctgctctggctg
gacacgccgcctgccgcgccctacgcgcagggcttggcgctgctgcgccagctcggcgcg
ctggacgccggcggcgccatcacgccgcacggccgcagcatggccgcgctgggcgcgcac
ccgcgcgttgcgcatatgctgctgcgcgcggcagagcttggagcggcgccgctcgcctgc
cggctggcggcgctgctccaggagcgggacctgctaaggggtcccgcggccttggacagc
gacatcacgctgcgcgtggaggcgctgctgaggtacgagcgctccgctgctgacagcggc
ggagcggacccggcggctctgcgcgcggtgcagcgcgagagccggagcttcctggcgcag
ctgcaggccgcgccgggtacgctgccggacaacatcagcctcaccgggctgctgttgtcc
ttcgcctatcccgaccgcatcgggcagaaacgcggcgatggcgcgtttctgctcaccggc
ggccggggggcggccatgagggaagggcagccgctgacgcgttcgccctatatcgtggcg
gccggcattgatgaccgcgccggccagagccggattatgcttgccgcagagctgcccgaa
gcagatctgctgaagcatcacaagggcagcctgcaggaacagcgcgaagtctactgggac
aaagagagcggaagtgtgcaggcgcgccggaggaccctgctgggcgccttggttgtaaag
gaaacttcacatgaacggcctgctgcggaagaggcggaagaggtgctgcttcgtgtcctc
tcggaagaagggctgaccctgctgccttgggacaaaggaaccgttcagctccggcagcgg
atggagttcctgcatcgtctgcgggcagatttcccggatgtgtcggaggaggcgttgctg
tcgtccctgcaggaatggcttcagccgtttattcagggaatgcgcaatctgcgcgatctc
cagcgggtgccggtgtccagagcgctggaaggattgctggactggaacagccggaagctt
ctggacagggaagcgccgacacatattacggttcccagcggttcccggattcctgtggat
tacagcaacccggcagccccggtgctcgcagtcaggctccaggagatgtttggtcaagtg
gataccccccggattgggggaggcaaggttgcagtcctgctgcatctgctatcaccggcc
agaagaccggtgcaggtgacggcggacctggcgagtttttggcgcagtacgtatttcgaa
gtcaaaaaggatctgaaaggccgctatcccaaacattattggccggatgatccgctccag
gcagcaccgacgaaccggacccgccctgctagataa
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