Paenibacillus graminis: PGRAT_18420
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Entry
PGRAT_18420 CDS
T03325
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03030
DNA replication
pgm03430
Mismatch repair
pgm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGRAT_18420 (polC)
03430 Mismatch repair
PGRAT_18420 (polC)
03440 Homologous recombination
PGRAT_18420 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgm03032
]
PGRAT_18420 (polC)
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_18420 (polC)
Enzymes [BR:
pgm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PGRAT_18420 (polC)
DNA replication proteins [BR:
pgm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PGRAT_18420 (polC)
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PGRAT_18420 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
DNA_pol_A_exo1
RNase_H_2
DIOX_N
MvaI_BcnI
Motif
Other DBs
NCBI-ProteinID:
AIQ69387
UniProt:
A0A089M843
LinkDB
All DBs
Position
complement(4164691..4169016)
Genome browser
AA seq
1441 aa
AA seq
DB search
MEQNVERRKRFELLMKQGEIPPSIIDPYFLDGHIERVEISRGNHDWHIVIVKESLVPAQT
YRTFVLRMREKLQHIAKVSFLFLYDEKISRAELVQEYWGLFLEWVQREIPSVNGWLTRST
QELQDGTLLLSLNDSMSLELARKKGIEGAIVKFYDKFFGLSLKVKLQIAENESKADAYEE
FQQKLQQEQRELVEMMMMASEPDEPEDEGDPNEVIKLQVGYEIKEQAVPILEIQDEEKKI
TIQGTIFGLESKELRNGNTLFTFCITDFTDSLQIKMFAKTKEDLKVMGQLANGKWVRARG
KVEYDRFMQIPELVMIPSDLSEVQAPPARKDLAPVKRVEFHLHTTMSTMDAVAPIDAYVK
TAAKWGHPAIAVTDHGVVQSFPDADHAAHKHKIKMLYGVEANVVNDSVNIVENPQPLDLK
KATYVVFDIETTGLSITRNNITELAAVKMCEGKELDRYTTFVNPHEKIPYHIQQLTNITD
EMVKDAPDLEPVLEEFVEFVGDSVLVAHNARFDMGFIQASLTKLGKPILPNPSLDTLELA
RLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTVALAGILNGLLADAEKLKNITRLERLN
DYVGNDLSNVRPFHCGIYALNPAGKKNLYKLISMSHTEYYKRVPCIPKSKLEEHRDGLLV
ISGCERGEFFEAVLNKTVEEAMEVAQFYDVLEIQPLTMYMHLVDKGFVASPEDLRGVVRK
ICEIGEQLNKPVIATGNVHYLEPRDKLFRDITIHGITGFSPLKDQRKPDAHFRTTDEMLT
EFEFLGAEKAMEVVVTNTVALADRFEEYPLFPSELFTPVIEGADEEIRNTCYNTAKSIYG
EDLPEVVVARLEKELAPIIKYGFSANYLISERLVKKSNQDGYLVGSRGSVGSSVVATFLG
ISEVNPLPAHYICANPECRHSEWFLDGSVPSGFDLPDKDCPDCGGKLRGEGQDIPFETFL
GFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGPDNVFRAGTIGTVAEKTAFGFTKKYEEHH
QKRWRGAEVGRLAAGCTGVKRSTGQHPGGIVVLPDYMEIEDITPVQYPADDVTAEWKTTH
FDYHAFDANLLKLDILGHDDPTMMRMLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVRPD
QIRTPVATYGVPEMGTKFVRQMLVESKPSSFADLLQISGLSHGTGVWLGNAQELIKNNTC
NIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLSAEWIEEMKKCKVPAWYIDS
CLKIQYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRAADFDIELCCKGYEAIGR
QIVEIEQKGFQALPKEKAMLPVLEMALEMTARGFTFKNIDLYRSDATKFTVDGTSLIPPF
SSLAGIGDNAAINIAAAKEAGEFLSIEDFQQKSKASKTVVELLNGMGCFRGLPESNQLSL
F
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaacgtggagagaagaaagcggttcgagcttttaatgaagcagggagaaatt
ccgccctcgatcattgatccctacttcttggacggacacattgaacgtgtggagatcagc
cgcggcaatcatgattggcatattgttattgtcaaagaaagtttggttccggcccagacg
taccggacttttgtacttagaatgcgtgagaagctgcagcatattgccaaagtcagcttt
ttgttcctatatgatgagaaaattagcagagcggagctagtgcaggaatattgggggctt
tttctggaatgggtccagcgggagattccttctgtcaatggctggctgacgcgttccact
caggaattgcaggacgggacgctgctgctgagcctgaacgactctatgtcactcgaattg
gcccggaaaaaaggcatcgaaggcgcgattgtgaaattttacgataaatttttcggcctc
tccctgaaggttaagctgcagattgccgagaatgagagcaaagcggatgcctatgaggaa
ttccagcagaagctgcagcaggagcagcgggagctggtggaaatgatgatgatggccagc
gagccggacgagcctgaagacgaaggtgatccgaacgaagtgatcaagctccaggtaggg
tatgaaatcaaggagcaggctgtaccgatccttgaaatccaggatgaagaaaagaaaatc
acaatccagggaaccatcttcggactcgagagcaaggagctgcgcaacggcaatacgctg
ttcactttctgcatcacggactttacggattcactgcaaattaagatgtttgccaaaact
aaggaagatctgaaggttatgggacaactggcgaacggcaaatgggtcagagcacgcggc
aaagtggaatacgaccgttttatgcagattcctgagctggtcatgattccttcggatttg
tccgaggtgcaggcaccgcctgcccgtaaagatttggctccagtcaagcgggtagaattt
catctgcatacgacgatgagcacgatggatgcggttgcacccattgatgcctatgtcaaa
acagccgccaaatgggggcatccggccattgcagtcactgatcatggcgtggtacagagc
tttcccgatgccgatcacgcggcccataaacataaaatcaaaatgctatacggtgttgaa
gccaatgtcgttaatgactcggtgaatattgtcgagaatccgcagccgcttgacctgaaa
aaagccacctatgttgtgttcgatatcgagaccaccggtttgtcgattacgcgcaataat
attactgagctggcggcagtcaaaatgtgcgaaggcaaggagctggaccgttatacgaca
tttgtcaatccgcatgaaaagatcccttaccatattcagcagctgaccaacattacagat
gaaatggtgaaggatgcgccggatctggagcctgtgctggaggagttcgtggaatttgtc
ggggacagcgtcctggtcgcccacaatgccagatttgatatggggtttatccaggcttca
ctgacgaagctgggcaagccgatattgcccaacccctcgctggatacactggagctggcc
cgtctcctgttccccagcatgaagaatcaccgtctgaacacattggcggataaatataag
gttctgctggagagccatcaccgtgcggtggatgataccgttgcactggcgggcatcttg
aacggcttgctggcagatgcggagaagctcaagaacatcacccgtctggagcggctgaat
gattatgtcggcaatgatctctccaatgtccggccgttccactgcggcatttatgcgctt
aatccggcaggcaaaaaaaatctgtataagctgatttccatgtcacatacggaatattac
aagcgcgtgccctgcattcccaagtccaagctggaagagcacagggatggcctgctggtg
atttccggctgtgaacgcggcgagttttttgaggctgtgctgaataagacggtggaggaa
gcgatggaagtcgcgcaattttacgatgttctggagattcagccgctgacgatgtacatg
catctggtggacaaggggtttgtggccagtccggaggatttgcgtggtgttgtgcgcaag
atctgcgagattggcgagcagctgaataagccagtcatcgccactggaaatgtgcattat
ctggagcctcgggacaagctgttccgcgatattacgattcatgggattaccggcttcagc
ccgctgaaggaccagcgcaagccggacgcccatttccgcacaacagatgagatgctcact
gaatttgaattccttggtgcggaaaaagcgatggaagttgtcgttacgaacactgttgcg
ctggccgatcggtttgaggaatatccgctttttccaagcgagctgttcacgcctgtcatc
gaaggtgctgacgaagaaatccgcaatacctgctacaatacggcaaaatcaatctatggc
gaagacctgccagaggttgtcgttgcccggctggaaaaggaactggcgccgattatcaaa
tacggcttctctgccaactatctcatctcggagcgccttgttaaaaagtcgaatcaggat
ggatatctggtcggctcgcgtggttccgtaggctcctctgtagttgcaaccttcctcggg
atctccgaggttaatccgctgcctgcgcattatatctgcgctaatccggagtgccggcac
agcgagtggtttcttgacgggagcgttccaagcggcttcgaccttccggacaaggattgc
ccggactgtggaggcaagctcaggggggaagggcaggatattccctttgagaccttcctc
gggtttaagggagataaggttcccgatatcgatcttaacttttcgggtgaatatcagccg
aatgcccataattttaccaagaccatgttcggaccggacaatgttttccgggcaggtact
atcggtacagtagccgaaaaaaccgccttcggcttcacgaagaaatatgaggaacatcac
cagaagcgctggcgcggagccgaggtcgggcgtctggcggcaggctgcacaggtgtgaaa
cggagcacaggccagcatcccggcggtatcgtcgttttgccggattatatggagatcgaa
gatattactccagtgcagtaccccgcggatgacgtcactgccgaatggaagaccacccat
ttcgattatcacgcgttcgatgcgaacctgctgaagctcgatattctgggacacgatgat
ccgaccatgatgcgtatgcttcaggatttgacgggcgttgacccgacgaccattccgatg
aatgatcccaaggttatgagcatgttcaattccacggaggcgcttggagtcagaccggac
cagatccgcacgccggtagccacctatggagtaccggaaatggggacgaagtttgtccgg
cagatgctggtagagtcgaaaccgtccagctttgccgacttgctgcagatctccggattg
tcccacgggacaggagtctggctgggcaatgcccaggagctcatcaagaacaacacctgc
aacatcaagacagttatcggctgccgcgacgatattatgctctacctgatctacaaggcg
ggaatggacgcggggctggccttcaaaattaccgagagtgtccgtaaggggaagggcttg
tccgccgaatggatcgaggaaatgaaaaaatgcaaggtacccgcctggtatattgattcc
tgcctgaagatccagtacatgttcccgaaggcgcatgctgccgcctatgttatttccgca
gtacgcaccgcttacttcaaactgtattatcctattgaatattatgcgacctatttttcg
gtccgggcggccgattttgacattgagttatgctgcaaaggctatgaggcgatcggccgg
caaatcgtagaaattgagcaaaaaggcttccaggcgctgccgaaggaaaaagcgatgctg
cctgtgctggaaatggctctggagatgaccgcgcgcggcttcaccttcaagaatatcgat
ttgtaccgttccgacgccaccaaatttaccgttgacggcaccagcctgattcctccattc
tcttcgcttgcgggaatcggggacaatgccgccatcaatatcgctgctgcgaaggaagct
ggagagttcctgtccattgaggacttccagcagaaatcaaaggcgagcaagacggttgtc
gaactgctgaacggcatgggctgcttccgcggattgccggagagcaaccagctgtcactg
ttttaa
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