Paenibacillus graminis: PGRAT_18670
Help
Entry
PGRAT_18670 CDS
T03325
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pgm
Paenibacillus graminis
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgm03032
]
PGRAT_18670
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_18670
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PGRAT_18670
DNA replication proteins [BR:
pgm03032
]
Prokaryotic type
DNA Topoisomerases
PGRAT_18670
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PGRAT_18670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
Toprim_4
Lar_restr_allev
RNA_POL_M_15KD
Toprim_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AIQ69436
UniProt:
A0A089M6N3
LinkDB
All DBs
Position
complement(4213634..4215730)
Genome browser
AA seq
698 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALDLDNSEECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDALFEAKFHKLNGEKKELGNENDVKEVLEAIKDAAFKVSE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSATAQEEAKELILAKYGEKFVPETPRQYSKKAAGAQDAHEAIRPTSALREPDMV
KEYMSRDQFRLYKLIWERFVSSQMSSAVLDTLSVDITAGTAVFRAVGSKVSFPGFMKVYV
EGNDDGTTDEEKFLPPLKAGDDLTKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELIIEQMEQFFPEILDVEFTAHMEGDLDHVEDG
EEDWVKVLAEFYTSFEKRLVFAEEEMKEIEIEDEVSDEMCEKCGKPMVYKLGRFGKFLAC
SGFPDCRNTKPIVKDIGVSCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSIKP
CPVCGSWMIEKRSKQGTKLQCTSCDHTEAVLEGEELAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgttggttattgtcgaatcgccggcaaaagcgaagacaattggcaaatat
ttaggcagtaaatatatcgtaaaggcttcaatggggcatatcagagatttgccgaaaagt
cagatcggggtagaagtagagaatgatttcaatcccaagtatatcacgatccgcggcaag
ggctctattctgaaagaactcaaagacgccagcaaaaaagtgaaaaaagtctatctggcg
gctgacccggaccgcgaaggtgaagccattgcctggcatctggcgcatgcgctggatctg
gacaactcagaggaatgccgggtcgtttttaatgagatcacgaagcaggctgtgaaggat
gccttcaagaccccgcggaagattaatatggatctggtgaacgcgcagcaggcgcggcgg
attctggatcgtctggtcggctacaagatcagcccgctattatggaagaaagtcaaaaaa
ggattgtcagccgggcgtgtgcagtctgttgccgtgaagattataatggaccgtgagaat
gaaatttctgcttttgttccaacggaatattggagcattactgcaaagctgggtatccgg
gatgcactgttcgaagctaagttccacaaactgaatggtgagaagaaagaactcggaaac
gaaaatgacgttaaagaagtgctggaggctattaaagatgctgctttcaaggtaagtgaa
gttaaagagaaagaaagacagcgccatccttcggctcccttcacaaccagctccctgcag
caggaggctgcgcgcaagctgggcttccgtgccgccaaaaccatgtctgtcgcacagcag
ctctatgagggcgttgaactgggcaaagagggaaccgtaggtttgatcacttatatgcgt
acagactcaacccggctgtccgcaactgcgcaggaagaagccaaggaattgattctggct
aaatacggtgagaagtttgtccccgagacgccgcgtcagtattccaagaaggccgccggc
gcgcaggatgcgcatgaagccatccgtcctacttccgcacttcgtgaacccgacatggtc
aaagaatacatgagccgtgaccaattcaggctgtataaactgatctgggaacggttcgta
tccagccagatgtcctcagcagttcttgatacgctctcggtagatattaccgcaggcaca
gctgtcttcagagccgtgggctccaaagtctcttttccgggctttatgaaggtgtatgtt
gaaggcaatgatgacggtacaacggatgaagaaaagttcctgccgccgctcaaagcgggc
gatgatctgaccaagcaggaaattgagccgaagcagcacttcacacagccgcctccgcgt
tatacagaagcgcgtctggtgaagacgctggaggagctcggcataggacgtccaagtacg
tatgccccgacactcgaaaccatccagaaacgcgggtatgtcgctattgaagaaaagaaa
tttatgccgactgagcttggagaactgatcattgagcagatggagcagtttttcccggag
attctggatgtagagtttactgcgcatatggaaggcgatctggaccatgtggaggatggc
gaagaagattgggtgaaagtattagccgaattttatacatcctttgagaaacggctggtc
tttgctgaagaagaaatgaaagaaatcgaaattgaagatgaagtttcggatgaaatgtgc
gagaaatgcggcaagcctatggtatataagctgggaaggttcggtaaattcctggcatgc
tccggatttcccgattgccggaataccaagccgattgtcaaggatattggcgtaagctgt
ccgaaatgccatgaaggcaaagttgtggagcgccgcagcaagaaaggccgtgttttttac
ggatgtgaccagtatcctggctgtgattttgtatcatgggacagaccatccattaaacca
tgtccggtctgcggctcctggatgatagagaagcgcagcaagcagggaaccaagctgcag
tgcacctcttgcgatcacacagaggctgtgctagagggcgaagaactggcagaataa
DBGET
integrated database retrieval system
