Paenibacillus graminis: PGRAT_29385
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Entry
PGRAT_29385 CDS
T03325
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PGRAT_29385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgm03021
]
PGRAT_29385
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_29385
Enzymes [BR:
pgm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PGRAT_29385
Transcription machinery [BR:
pgm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PGRAT_29385
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PGRAT_29385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIQ71235
UniProt:
A0A089MFS8
LinkDB
All DBs
Position
complement(6445401..6449012)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKANLLQGTPEKYFIYEKG
ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTKTSMILDKIKQLGFTYSTRSGVTVA
VSDVIVPEEKVTILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNVKLSDPNEESMLEDLETV
PAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacattaacagttttgaatttatgaagatcgggcttgcttctccggaaaaaatt
cgctcttggtcccgcggagaagtgaaaaaaccggaaaccattaactatcgtactttgaaa
ccggaaaaagagggcttgttctgcgagcgcattttcggaccgcaaaaggactgggaatgt
cattgcggcaagtacaaacgtgtacgttacaaaggcgttgtgtgcgaccgttgcggcgtt
gaagtaactcgtgccaaggttcgccgtgaacgcatgggtcacattgaattggcagcacca
gtttctcatatctggtattttaaagggattccaagccgtatgggcctggccctcgatatg
tccccaagatcgcttgaagagatcatctactttgcatcctatgttgtaactgatccaggt
gaaacaccgctggagaagaaacaactcctgtccgagaaagaataccgcagctaccgtgaa
aaatacggttacggattccaagccggcatgggtgccgaggctgttaagaaactccttcag
gatatcgatatcgataaagaactggagttcctcaaagaagagctgcgtacggctcagggc
caacgccgcaaccgggcgatcaaacgcctggaagtaatcgaggctttccgcaactccggc
aacaagcctgactggatgatcatggatgtgcttccggttattccgccagagcttcgtcca
atggttcaacttgatggcggacgttttgctacgtctgaccttaatgatctgtatcgccgc
gtaattaaccggaacaaccgtctgaagagactgctcgatctcggtgcgcctgatattatc
gtgcagaacgagaaacgtatgcttcaagaagccgtggatgcattgattgacaacggccgc
cgtggccgtcctgtaactggtcctggtaaccgtccgctcaaatcgctcagccacatgctg
aaaggtaagcagggacgtttccgccagaacctgctcggtaaacgcgttgactattccggc
cgttccgttatcgttgtaggaccgtatctgaaaatgtaccaatgcggtctgccgaagaaa
atggcgcttgaattgttcaagccgttcgtcatgaaagagctcgtgaacaagggacttgcc
cataacatcaagagtgccaaacgtaaagttgaacgtgtaagccctgaagtctgggatgtg
cttgaagacgttattaaggagcatccggttctgttgaaccgtgcacctacgcttcacaga
ctggggattcaggcatttgaaccgattctggtagaagggcatgccattcgtctgcacccg
ctcgtatgtacggcttacaatgccgactttgacggtgaccagatggcggtgcacgtacca
ctgtcagcagaagctcaggctgaagcgcgtattctgatgctggcatcaggcaacatcctg
aaccctaaggatggcaaaccggtagttaccccttcccaggatatggtccttggtacattc
tatttgaccatggacaacaaggaagaaaaaggaaccggcatgattctgcgcactgtgaac
gaagcagtttcggcttaccagcgtggaactgcaggcctgcatgcacgtgtagctattcct
gcaaaagctctcggtaaaacatgtttcaccgaagcccagcagaatgcaatgctcgttacg
actatcggtaagattatcttcaatgaaatctatccgagcagcttcccgtatatcaacgaa
gcaactaaggctaacctgctgcaaggcacaccagagaagtactttatctatgaaaaaggc
gcggacatccgcgaacttattctgagcctgccggacgcaagtgctgtaggtaaggaatac
ttagggctgattattgcccgctgctttgaaatttatcatacaaccaagacatccatgatt
ttggataaaatcaagcaactcggcttcacgtactccactcgttccggtgtaacagtagcc
gtatcggatgttattgtgcctgaagaaaaggtaaccattcttaaagagtcggaagccaag
gttgatgtggttgcgaatcaataccgccgtggtctgattaccaatgatgagcgttatgac
cgtgttattgaaatttggtcgaagactaaggatgatctgacgaacatcctgctgaaatcg
atggaccggttcaactccatcatgctcatggttgactccaaggcgcgcggtaacaaatcg
cagattacacagctgggtggtatgcgtggtctgatggctacgccgtcaggacggattttc
gaattgccgatcaaggcgaacttccgtgaaggccttacagtcctcgagtactttatctcc
actcacggagcgcgtaaaggtctggcggatacagcgttgcgtacagcagactcaggttac
ctgacccgccgtctcgttgacgtggcacaggatgttatcgtccgggaagatgactgcggc
actgacaaaggcttcactgtcagccgtattcaggatggcaaggaagttattgaggatctg
tacgaccgtattgaaggacggtattcctttgaaaccgtacgtcatccggaaacgaaagaa
attatcgttaaccgcaacgatctgattgactccgacaaagctgaggaaattgtgaacgcc
ggggtaaccaaactgcaaattcgttccgtgctgagctgccgtgcccgtcacggggtctgc
aaaaaatgttacggacgcaatctggcaacaggcaaacatgtggatatcggtgaggccgta
gggattatcgccgctcaatctatcggtgaaccaggaacccagcttaccatgcgtacgttc
cataccggtggtgttgccggtgatgacatcacgcaaggtttgccgcgtattcaagagctg
tttgaagcccgtaaccctaaaggacaggcgacaatcagtgaaattgacggagtaatcaag
gaaatccgcgaaaccaaggaccgccgcgaaatcgaggttcagggtgaagcagaatccaag
acctactccattacctatggttcccgtctgcgtgtcagtgaaggccaggagattgaagca
ggggatgaactgacggacggttcgatcgatccaaaagaaatgctgcgcatcaaagggatc
cgcggggtacagaactacattctgcaggaagtgcagcgtgtatatcgtaaccaaggcgta
gaaatcaatgataagcacattgaagttatgatcaagcagatgctgcgcaaaatccgcatc
atcgaagctggcgatacaaatctgttgccaggtgccttctcggatatccatgaatatgaa
gctgccaacaaggaagccattctcactggtaaagagcctgcagtcgctaagccagtgctg
ctcggtatcaccaaggcttcacttgagacagattccttcctgtctgctgcgtccttccag
gaaacgactcgtgtcctgacggatgctgcaatcaaaggaaaagtggataagcttctcggc
ctgaaagaaaacgttctgattggtaagttgattcctgccggtacgggtatgaaccgttac
cgcaatgtcaaactgagcgatccgaatgaagaaagcatgctggaagacttagagactgta
cctgctgaataa
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