Pseudobacter ginsenosidimutans: FSB84_10055
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Entry
FSB84_10055 CDS
T06126
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FSB84_10055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgo03400
]
FSB84_10055 (ligD)
Enzymes [BR:
pgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FSB84_10055 (ligD)
DNA repair and recombination proteins [BR:
pgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FSB84_10055 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEC45911
LinkDB
All DBs
Position
complement(2446889..2448814)
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AA seq
641 aa
AA seq
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MLASLASKPFNDPDWLYEIKWDGYRAITFLQNGKVEIVSRNNKSFHETYYPINEGFKQWK
VNAVLDGEIIVINAKGKADFAALQEWRSEADGELRYYLFDLLWLEGMDMTALPLTERREV
LKEIIPLNDEIILYSPDFDTTGTTFFKQAQKTGLEGILAKKKDSIYEPGKRTRNWLKIKT
ERTLEAIIAGYTLNEGSNKLFSSLLLGIYENGELQYIGPVGTGFNKKTQEELMLAFKPLR
SKRCPFKEIPEYNKPSRFRPNPPKASVTWLKPALVAEVSYQTVAPGGILRHPSFKALRTD
KKASEAKTEHAVKPEKLYKKTKQKEKDKTAKVVRKTLLNPTDATQVRIINGSSFTFNNLH
KVFWPVEGYTKRDMLNYYYQVAPYILPYLKNRPQSLNRFPNGIKGKSFYQKDLTAHAPEW
MKLFPYTTSEGEHKNFMVPEDERALLFMANAGAIEMNPWNSTIQKPDHPDWCLIDLDPSS
KNSFEQVIQTAQVTKQVLDELKVPGYPKSSGSTGIHIYIPLNAKYTYDECQLFGKLIATR
VHEILPDFTSIERLTKNRKGKLYIDYLQNRPKATLAAPYSLRPKPGAPVSMPLFWEEVKK
GLTITDWHIGNAIARIRSEGDIFKPVLGKGIDMKKVLKGLA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgctggcatcccttgcatccaaaccatttaacgatccggattggttgtatgaaatcaaa
tgggatggttacagggctattacatttttacaaaatggaaaagtggaaattgtttcccgc
aacaacaaatccttccatgaaacatactaccccatcaatgaaggtttcaaacaatggaag
gtaaatgctgtactggatggtgagatcatcgtaatcaacgcgaaagggaaagcagacttt
gccgcattgcaggaatggcgaagtgaagccgacggagaactacgctactatctcttcgat
ctgctttggttggagggcatggatatgactgcactgccgcttactgaaagaagggaagta
ttgaaagagatcattcccctgaacgatgagatcattctctattccccggactttgacacc
accggcaccaccttcttcaagcaagcacagaaaacaggactggaaggcatcctggccaag
aaaaaagatagcatctatgagcccggaaagcgcaccaggaactggctgaagatcaaaacc
gaaagaacgctggaagctatcattgcaggctatacgctgaatgaaggcagcaataaatta
ttcagctccttactgttgggtatatacgaaaatggagagctgcaatatattggcccggtg
ggcaccggcttcaataagaaaacacaggaggagttgatgctggctttcaagccacttcga
agcaaacgctgtcccttcaaagagattccggaatacaacaaacccagccgcttccggccc
aatccgcccaaagcatcggtcacctggctaaaacccgccctggtagcagaagtaagttac
cagactgttgcgcccggcggcatactcaggcatccatctttcaaagcactccggaccgac
aaaaaagcttctgaagccaaaacagaacacgcagtgaaaccagaaaaactgtacaaaaaa
actaaacaaaaagaaaaggataaaacagctaaagttgtccggaaaaccctgctcaatcca
acggatgccactcaggtgcgcatcatcaacggatcatcctttaccttcaataatcttcat
aaagttttctggcctgttgaagggtatacaaaaagggatatgctcaattactactatcag
gtggctccctatattttaccttatctgaaaaacaggccgcaatcgctgaaccgttttccg
aatggtatcaaaggaaaaagtttttatcagaaagacctcactgcacatgctccggaatgg
atgaagctatttccctataccaccagtgaaggcgaacataagaatttcatggtgccggag
gatgaacgcgcattactcttcatggcaaatgccggcgctatcgagatgaacccctggaac
agtacaattcaaaaacctgatcatcccgattggtgcctgatcgatctggatcccagttca
aagaatagcttcgagcaggtgatacaaactgcgcaggtcaccaaacaggttctggatgaa
ctgaaagtaccggggtatcccaaaagctccggctcaaccggcatccatatctatattccg
ctcaatgcaaaatatacctatgatgaatgccagctcttcggtaaactgatcgcaacgagg
gtgcatgagatccttccggattttaccagtatcgagcggctcaccaaaaacaggaaggga
aaactgtacatcgattatttgcagaaccgccccaaagccacgctggcagctccttacagc
cttcgacccaaacccggcgcaccggttagcatgcctttgttctgggaagaagtgaaaaaa
gggttgacaatcactgactggcatatcggcaatgccattgcaagaataagatcggaagga
gatattttcaaaccggtcctcggaaaagggatcgatatgaaaaaagtattgaagggatta
gcataa
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