Paraburkholderia graminis: CUJ91_08255
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Entry
CUJ91_08255 CDS
T05548
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUJ91_08255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_08255 (ligD)
Enzymes [BR:
pgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUJ91_08255 (ligD)
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUJ91_08255 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXF07919
LinkDB
All DBs
Position
PHS1_A:1846520..1849342
Genome browser
AA seq
940 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGTAAKKRGSRGATRPTVEQGLSYVIQEHHARRLHYDFRL
ELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGTFEGEIPPGNYGAGTVIVWDRGTW
EPVGGPAEAARAYRAGKLKFHLHGDKLHGGWTLVRSHMRGDADKEQWLLIKERDDEARDE
SEYDILAERPGSVLSGAGTPAGKAKAGKQSDKQAIKQSAGKTRTASVRGDPKRPDIVATR
SSESLRELAASPAIEGAVKAKLPASLKPQLATLVDATPPGDDWTYEIKFDGYRVLARIDA
SEKTRGVQVFTRAGNDWTAKFSKQVKAFAQLGLDSAWLDGEAVVLDENGVPSFQALQNAF
DSNRPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSADDL
LKSACDMALEGIIGKRRDSGYVSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLL
GVHDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASTPRERSRTPVHWVEPVL
VAECNFAEWTSDGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEAEVAPKKRAA
RGEANKTAAKSASKVATKTASKVATKSATQNSAEPTAPRAKKSSPAEVAGVRISHPDRVI
DKSTGARKIDLVQYYESVAQWMLPHLVDRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQ
HPGLDPGHPPLITVDSAKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWD
RMIEAAMLTRSLLEELGLTSFCKTSGGKGLHVVVPLSKHAGWDEVKEFSQAVAQHMASTL
PKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDEVAQTTGGD
QWNIENLHERLDELKGDPWADYAKTRQRITAAMRKRLSGA
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacagactcgacctctataaccgcaagcgccgcttcgacgaaacgccggagccc
gcgggcaccgccgcgaaaaagcgcggcagccgcggcgccaccaggccgacagtcgaacag
ggcctgtcctacgtgatccaggaacaccacgcacggcgtctgcactatgacttccggctc
gaactgaacggcgcgctgctgtcgtgggccgtgccgaaagggccgagcctcgatccgtcg
gtgaagcgcctcgccgtgcatgtcgaagaccatccggtcgaatacgggacattcgaaggc
gagattccgccgggcaattacggcgcgggcacggtcatcgtatgggaccgcggcacatgg
gaacctgtcggcggcccggccgaagcggcgcgtgcgtatcgcgcaggcaagctcaagttc
catctgcacggcgacaagctgcacggcggctggacgctcgtgcgcagccacatgcgcggc
gacgcggacaaggaacagtggctcctcatcaaggaacgcgacgacgaggcgcgcgacgaa
agcgaatacgacattctggccgaacggcccggcagcgtgctgagcggcgcggggacgcct
gcggggaaggcaaaagccggcaagcagagcgataagcaggccatcaagcagagcgccggc
aaaaccagaaccgcctcggtgcgcggcgatccgaagcgccccgacatcgtcgcgacgcgc
agcagcgagtcgctgcgcgaactcgccgcatcgcccgcgatagaaggcgcggtgaaggcc
aaactgcctgcctcgctgaagcctcaactggcgacgctcgtcgacgcgacgccgcccggc
gacgactggacatacgaaatcaagttcgacggctatcgcgtgctggcccgcatcgacgca
agcgagaaaacccgcggcgtgcaggtcttcacgcgcgcgggcaacgactggaccgcgaaa
ttcagcaagcaggtgaaggcgttcgcgcaactgggcctcgacagcgcgtggctcgacggc
gaagccgtggtgctcgacgaaaacggcgtgccgagtttccaggcgctgcaaaacgcgttc
gattcgaaccgtccgcaagacatcgtcgtctatctgttcgacgtgccgtttctcaacggt
tacgacttgcgcggcgtgccgctgcaacagcgccgcgcgattctgcgcgcgctgctggag
cccgtcgacgacagcgtgctgcgtttttcgaacgacttcgagttcagcgccgacgatctg
ctgaaaagcgcgtgcgacatggcgctcgagggcatcatcggcaagcggcgcgacagcggc
tatgtgtccggccgctctgccacgtggatcaagctgaagtgccgtcggcggcaggagttc
gtgatcggcggctattcggaaccgtcgggcagccgcgcggcgttcggtgcgctgctgctc
ggcgtgcacgacagcaagggcaaactgcagtacgcggggcgcgtgggcaccggtttcgac
gccgcgttgttgcgctcggtgaagaaggaactcgacgcgcacgaaacgaagcgcatgccg
ttcgcgagcacaccgcgcgagcgcagccgcacgcctgtgcattgggtcgagccggtgctc
gtcgcggaatgcaatttcgccgaatggacgagcgacggcatcgtgcgtcaggcgtcgttc
gtgagtctgcgcaaggacaagccggcgcgccagatcgtcaaggaagcaccacgcaagggg
gacgacgtgcaacagcaaaccgatatcgaggccgaggttgcgccgaaaaagcgtgcggcg
cgcggcgaggccaacaaaaccgccgccaaatccgccagcaaagtggccacgaaaaccgcg
agcaaagtagccaccaaatccgccacccaaaactcagccgaacccaccgcaccgcgagcc
aaaaaatcctcgcccgccgaagtcgccggcgtccgcatctcgcatcccgaccgcgtcatc
gacaagagcaccggcgcgcgcaagatcgacctcgtgcagtactacgaatccgtcgcgcaa
tggatgctgccgcatctcgtcgaccggccggtgtcgctcgtgcgcgcgccggaggacatc
ggcggcgagctgttttttcagaagcacacgcagaagctgtcgattccaaacatcacgcag
catcccgggctcgatccgggtcatcctccgctgatcaccgtcgatagcgcgaaggcgctc
gtcggcgccgcgcaaatgggcacgatcgaatttcacacatggaacggcgtggcgtcgaac
atcgaaaagccggaccgcgtggtgttcgatctcgacccggacccgtcgctcggctgggac
cggatgatcgaggccgcgatgttgacgcgctcgctgctcgaggaactcggcctcacgtcg
ttctgcaagacgagcggcggcaaaggtctgcacgtggtcgtgccgctctcgaaacacgcg
gggtgggacgaggtgaaggagttctcgcaggccgtcgcgcaacacatggcgagcacgctg
cccaagtacttcagcgcgaagatgggcgcgcagaatcgcaagcagaagattttcgtcgac
tatctgcgcaataaccgcggctcgagtaccgtcgccgcgttttcggtgcgggcgcgtccc
ggcctcggcgtttcggttccgcttgcttgggacgaagttgcgcaaacgacgggcggcgat
cagtggaatatcgagaacctgcacgagcgcctcgacgaactgaagggagacccgtgggcc
gattatgcaaagacgcggcaacgcattacggcggcgatgaggaagcgtctgagcggcgcg
tag
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