Paraburkholderia graminis: CUJ91_08330
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Entry
CUJ91_08330 CDS
T05548
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUJ91_08330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_08330 (mfd)
Enzymes [BR:
pgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUJ91_08330 (mfd)
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUJ91_08330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXF07933
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All DBs
Position
PHS1_A:complement(1865768..1869250)
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AA seq
1160 aa
AA seq
DB search
MPDIAATSQYSPPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLSQEIGFFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQGAQLAFIGDLDAA
IRRFTNDTKQRYNFLSHDRDRPILEPQRLFLTDEDFFTLAKPFARLVLPANAGGGWATPL
PNLAIDRHADDPVSALRAFLDTTPNRVLFAAESAGRRETLLQLLADNHLKPASSDSFQDW
LTGDARFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKDGKEPDLTAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHSDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGSPSRGTAAATAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagatatcgccgcaacatcgcagtactccccgcccgtcgcgctcgtcaaggccggc
cagcgtttcgccttcgacggcacgcatggctcgtccgacgccctgctgatcgcccgctac
catctcgcctatcgcgagaaggtgccgttgctcgcggtcgtctgcgagagcgcggtcgat
gcacagcggctgtcgcaggaaatcggctttttcgcgccggacgcgcgcgtgcgcctgctg
cccgactgggaaacgctgccttacgacaccttttcgccgcaccaggatctggtctccgag
cgcctcgccacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgcc
accacggcgctgtaccggatgccgccggcgtcgtttctggccgcctatacgttctcgttc
tcgcaaggcgagcgcctcgacgaggccaagctgaaggcgcagctcacgctggccggctac
gaacacgtgagccaggtcgtgcgccccggcgaatactgcgtgcgcggctcgctgctcgat
ctttacccgatgggctcgcccttgccctaccggatcgatctgttcgacgaccaggtggat
tcgatccgcgcgttcgatcccgacacgcagcgcagcctttatccggtgaaagacgtgcgc
ctcttgccgggccgcgaattccccttcgacgaagccgcgcgcaccgcgtttcgcagccgc
tggcgcgagacgttcgagggcgatccgagccgcgcgtcgatctataaggacatcggcaac
ggcgtgccgtcggcgggcatcgaatattatttgccgcttttcttcgacgagacggccacc
ctcttccactatttgccccaaggcgcgcaactcgcgtttatcggcgatctggatgcggcg
atccggcgcttcaccaacgacaccaagcagcgctacaacttcctgtcgcacgatcgcgac
cggcccattctcgagccgcagcgcctctttctgacggacgaggatttcttcacgctcgcc
aagccgttcgcgcgcctcgtgctgccggccaatgcgggcggcggctgggcgacgccgctg
ccgaatctcgcgatcgaccgtcatgcggacgatcctgtctcggccttgcgcgcgtttctc
gacacgacgccgaaccgcgtgctgttcgccgcggaatcggcgggccgccgcgaaacgcta
ttgcagttgctcgcggacaatcatctgaagcccgcgtcgagcgacagcttccaggactgg
ctcaccggcgacgcgcgtttttcgctcggcgtcgcgccgcttgcgaacggctttgcggtg
ccggtcgacggcatcgcgatcatcaccgagaccgagctttacggaccgctcgcgcggcgt
gcggggcgtcgtcgccaggaacaggcgagcaacgtcgattcgatggtgcgcgatctgtcc
gagctgaaggtcggcgatccggtcgtgcattcgcagcacggcattggccgctacatgggc
ctcgtcacgatggacctgggcgaaggcgaaaccgagttcctgcacctcgaatacgcgggc
gacagcaagctctacgtgccggtcgcgcaactgcatgtgatctcgcgctatagcggcgcc
gacccggaaagcgcgccgctgcattcgctcggctcgggtcaatgggagaaggccaagcgc
aaggctgcgcagcagattcgcgacacggccgccgagctgctgaatctctacgcgcgccgc
gccgcgcgctcgggccacgcgttcgcgctcgaaccgaaagactatgtgaagttcgccgag
agcttcggtttcgaggaaacgccggaccaggccgcggccatcgccgccgtgatcggcgac
atgacgagcggcaagccgatggaccgtctggtatgcggcgacgtgggcttcggcaagacc
gaggttgcattgcgcgcggcgtttatcgcggtgatgggcggcaagcaggtcgcgctcctc
tctcctaccacgctgctcgccgaacagcacacgcaaaccttcacagaccgcttctccgat
tggccggtgcgcatcgccgaactgtcgcgcttcaagtcgaccaaggaagtgaacgccgcg
atccagcagatcaacgaaggcagtgtcgacatcgtgatcggcacgcacaagctgctctcg
tcggatgtgcagttcaagcggctcgggctcgtgatcatcgacgaagaacaccgctttggc
gtgcgtcagaaagaagcgctcaaggcgttgcgcgcggaagtggacgtgctcacgctgacc
gccacgccgattccgcgcacgctcggcatggcgctcgaagggctgcgcgatttctcggtg
atcgcgaccgcgccgcaaaagcgtctggcgatcaagaccttcgtgcgtcgcgaggaagaa
agcgtgattcgcgaagcgatgctgcgcgaactcaagcgcggcggccaggtttactttttg
cacaacgaagtcgagaccatcgagaatcgccggcagatgcttgaagcgctcgtgcccgaa
gcacgcatcgcggtcgcgcatgggcagatgcacgaacgcgaactcgaacgcgtgatgcgc
gacttcgtcgcgcaacgcgcgaacgtgctgctgtgcacgacgattatcgaaaccggcatc
gacgtgccgagcgcgaatacgatcctgattcatcgctcggacaagttcggtcttgcgcaa
ttgcaccagttgcgcggacgcgtcgggcgctcgcatcaccaggcgtacgcgtatctgctc
gtgcacgatccgcaagggctgacgaagcaggcgcagcgccggctcgaggcgatccagcaa
atggaggaactcggttcgggcttctatctggccatgcacgacctggagattcgcggcacg
ggcgaagtgctcggcgacaagcagtcgggtgagattcacgagatcggtttccagctttac
accgacatgctcaacgacgccgtgaaggcgctgaaggacggcaaggaacccgacctcacc
gcgccgcttgccgcgacgaccgagatcaatctgcatgcgcccgcgattcttcccgccgac
tattgcggcgacgtgcaggaacgtctgtcgctctacaagcggctcgcgaattgcgagcac
agcgattcgatcgacggcattcaggaagagctgatcgaccgcttcggcaagctgccgccg
caggcgcatgcgcttgtcgagacgcatcggctgaggctggcggcgaagccgttgggcatt
tcgaagatcgacgcgggcgaagccgtgatcggcttgcagttcattccgaatccgccaatc
gacgcgatgcgtatcatcgagatggtgcagaagcacaagcacatcaagctcgcgggccag
gacaagctgcgtatcgaaacgcgcagtcccgaccttgcggtgcgcgtcgcgaccgtcaag
gagacgttgcgcgcgctcgggtcgccgagccgcggtacggccgcagcaacggccgcgcga
tga
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integrated database retrieval system
