Pedobacter ginsengisoli: CPT03_07335
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Entry
CPT03_07335 CDS
T05145
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CPT03_07335 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_07335 (ligD)
Enzymes [BR:
pgs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CPT03_07335 (ligD)
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CPT03_07335 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
GH3
Motif
Other DBs
NCBI-ProteinID:
ATP56297
UniProt:
A0A2D1U3V8
LinkDB
All DBs
Position
1787743..1790277
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AA seq
844 aa
AA seq
DB search
MSLKEYGKKRDFNKTAEPKAIKTKSTGKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAVMVEDHPFDYKNFEGIIPKGEYGGGTVIVWDEGTYEPIEKVKGKKAQE
KYLLNQLHDGSLKIILHGKKLKGEYALVKTQGMGENGWLLIKHKDEYASLVDITKKDTSV
LSSQTIEQVKKAKVTEVSAEVNTLLKKGKKSKIPIGMKPMLTTLIDKPFDDPNWVYEVKW
DGYRALAFCLKNGDVQLLSRNNKQFNEKFYPIFRILQGLKQDLVIDGEILIINDKGISSF
KDLQNWRSEEDGKLVYYVFDIIWYEGKDLTGLPLNVRQKILAEVLANTDDHIKISKVFNG
DGNKFYEAAVKKGLEGIIAKKSDSTYAKNTRSKDWLKIKINKYQEVVIAGYTKNSGTSKQ
FSSLLLGVYKNNELHYVGKVGTGFNDHFQKELIEKFRSLVTVKSPFFEVPNVNKGSRYKP
NPSNTKVTWLKPELVCEVSFTEVTDDGVFRHPSFRGMRIDKKAKEAVREVEIETKGFLNP
IDETQLRKLNGHPLKFTHLNKLYWPEDKVTKREMFNYYYQVADYILPHLKDRPMSLNRFP
GGINSKGFYQKDVSEIAPTWAKTFPHTTEDGEHKEYLLGNDEATLLWMASLGCIEMNPWF
SRTQTIDNPDYCVIDLDPDKNTFNQVIEAAQIVKEILDQIEIPCYAKTSGSTGMHIYIPL
GAKYSYDQSQMFARIIVNLVHREIPAFTSLERMIANRKGKMYLDFLQNRPGATIACVYSL
RPKPGATVSMPLTWDEVKPGMTMGDFTIFNAIDRIKETGDLFKGTLGKSIDLVVAINKAK
KIFG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaaggaatatggtaaaaaacgtgattttaataaaacagccgagcccaaagca
attaaaacaaaatccacaggaaagcttcactttgtgattcagaaacatgatgctagtcgt
ttacattacgatttccgcctggagatggaaggcgtgttaaaaagttgggcggttcccaaa
ggaccttctacagacccaaaaacaaaacgtttagcagtaatggtggaagaccatcccttt
gattataaaaactttgaaggcatcattcctaaaggcgaatatggtggaggtacagtaatt
gtttgggatgaaggaacctatgaacctattgaaaaggttaaaggtaaaaaagcacaggag
aaatatttacttaaccaattgcatgatggatcactcaaaattatcttgcatggcaagaaa
ttaaaaggagagtatgcacttgtaaaaacacaaggcatgggagaaaatggctggttgtta
attaaacataaagatgagtacgcctcgctggttgatatcactaaaaaggatacatcggtg
ctgtcttcacaaactatagagcaagtaaaaaaggcaaaggttactgaagtttcggcagag
gttaacacgctattgaaaaagggtaagaaatctaaaattccaattggaatgaagccaatg
ctgactaccttaatagacaaaccttttgacgaccctaattgggtttatgaggttaaatgg
gatggttatcgtgcattagcattctgtttaaaaaatggagatgttcagttactttccaga
aataacaaacaattcaatgaaaaattttatccaatttttaggatacttcagggcttaaaa
caggatttggtaattgacggcgaaattctaataattaatgataaaggtatatctagtttt
aaagatcttcaaaattggcgcagtgaggaagatggtaaactggtttattacgtattcgat
attatctggtatgaaggtaaagatttaacaggacttccgcttaatgtccgccaaaaaata
ctggcagaagttttagcaaataccgacgatcatatcaagataagtaaggtatttaatgga
gatggaaataaattttatgaagctgctgttaagaaggggctagagggaattattgctaaa
aaatcagacagcacctatgctaaaaatacccgttcaaaagattggttaaagattaaaatt
aacaaatatcaggaagtggttattgcaggttacaccaaaaatagtggtacatctaaacaa
tttagctcactcttgctgggggtatacaaaaataacgagttacattatgttggtaaagtt
ggtactggttttaatgatcattttcagaaagagctaatagagaaatttcgttcattggtt
accgtaaaaagtcctttttttgaagtcccaaacgtaaataagggatctcgctacaagccc
aatccttccaatactaaagttacctggcttaagccagaattagtttgcgaagtttcattt
acagaggtaacagatgatggcgtatttcgccacccttcatttcgtggcatgcgcatagat
aaaaaagctaaggaggcagttagagaagttgaaattgaaactaaagggtttcttaaccct
attgatgaaacgcagttacgaaaactgaatgggcaccctctaaaatttacccacttaaac
aagctctactggccagaagacaaggtaaccaaaagagaaatgtttaattattattaccaa
gtggccgactatattttgcctcatttaaaggataggcctatgtcgttaaaccgctttccc
ggcgggattaatagcaaaggattttatcagaaagatgtaagtgaaatagcgccaacctgg
gccaaaacatttcctcacacaacagaggatggtgaacacaaggagtatctgcttggaaat
gatgaggctacattgctttggatggcctcgcttgggtgcatagaaatgaatccatggttt
tccagaacccaaacaattgacaatccagattattgtgtgattgatctggacccagataaa
aacacatttaatcaggtaatagaggccgcacaaatagtaaaagagatactagaccagatt
gaaataccgtgctacgcaaaaacttcaggttcaacaggcatgcatatttacattccgcta
ggggcaaagtacagttatgatcagtctcaaatgtttgccaggatcatagtaaatttagtg
caccgtgagattcctgcttttaccagtttagaacgtatgattgctaatcggaaaggaaaa
atgtatctggatttcttacagaacagacctggagctactattgcgtgcgtttattccctt
agacccaaacctggggccacggtttctatgccacttacctgggatgaagttaaaccggga
atgaccatgggtgattttacaatcttcaatgcaattgatagaatcaaagaaactggtgat
ctatttaaaggaacacttggaaagagtattgatttagtagtggccattaataaggcaaaa
aagatttttggataa
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