Pedobacter ginsengisoli: CPT03_20625
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Entry
CPT03_20625 CDS
T05145
Name
(GenBank) hypothetical protein
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPT03_20625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgs03021
]
CPT03_20625
Transcription machinery [BR:
pgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPT03_20625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_23
HTH_24
HTH_11
HTH_10
HTH_40
Sigma70_ECF
Phage_terminase
HTH_38
HTH_Tnp_ISL3
HTH_28
HTH_AsnC-type
HTH_5
HTH_20
TPR_8
HTH_29
UPF0122
Mga
HTH_17
Fe_dep_repress
HTH_7
CENP-B_N
Sigma54_DBD
TPR_2
DUF1492
DUF2774
Xre-like-HTH
HTH_36
Sigma70_r3
NUMOD1
Terminase_5
Motif
Other DBs
NCBI-ProteinID:
ATP58696
UniProt:
A0A2D1UAP3
LinkDB
All DBs
Position
4907123..4907701
Genome browser
AA seq
192 aa
AA seq
DB search
MVVYSNLSDQELAGLLRSQSDQRAFSELYVRYKGVLHGYAYKKLGNLEEARDLIQELFSA
LWNKRDTLPDTHNLSGYLYTTLRNRILDFVAHRQVEHKYLKSLQDFITEANFITDRQVRE
RELTRLIEDAVNELPPKMREVFLMSRNTGKSHKEIAEELNISESTVKNHVKGALKVLKTK
LGLFAYILFLLK
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atggttgtttacagtaatctatcggatcaggaattggctggccttttgagaagtcaaagt
gaccagcgggcattcagcgaactttatgtaaggtataaaggcgtgctgcatggctatgcg
tataagaagctgggcaaccttgaagaagcgcgtgatcttattcaggaattgtttagcgcc
ctttggaacaagcgggataccctgcccgacacccataacctatcaggatatttatatacc
actttaagaaaccgcattcttgattttgtggcgcacaggcaggtagagcataaatacctc
aaatctttacaggactttattacagaggcaaatttcattaccgacaggcaggttagggaa
agagaacttacccggcttattgaagatgcagtgaacgagctgccaccaaaaatgcgagaa
gtatttttaatgagcagaaatacaggcaaaagccataaggagatagcagaagaactgaat
atctccgaatctacagtaaaaaatcatgttaaaggagcgcttaaagtacttaaaacaaaa
ttgggcttgtttgcatatatcttgtttttgctgaagtag
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