KEGG   Pedobacter ginsengisoli: CPT03_20625
Entry
CPT03_20625       CDS       T05145                                 
Name
(GenBank) hypothetical protein
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_20625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_20625
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_20625
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE HTH_23 HTH_24 HTH_11 HTH_10 HTH_40 Sigma70_ECF Phage_terminase HTH_38 HTH_Tnp_ISL3 HTH_28 HTH_AsnC-type HTH_5 HTH_20 TPR_8 HTH_29 UPF0122 Mga HTH_17 Fe_dep_repress HTH_7 CENP-B_N Sigma54_DBD TPR_2 DUF1492 DUF2774 Xre-like-HTH HTH_36 Sigma70_r3 NUMOD1 Terminase_5
Other DBs
NCBI-ProteinID: ATP58696
UniProt: A0A2D1UAP3
LinkDB
Position
4907123..4907701
AA seq 192 aa
MVVYSNLSDQELAGLLRSQSDQRAFSELYVRYKGVLHGYAYKKLGNLEEARDLIQELFSA
LWNKRDTLPDTHNLSGYLYTTLRNRILDFVAHRQVEHKYLKSLQDFITEANFITDRQVRE
RELTRLIEDAVNELPPKMREVFLMSRNTGKSHKEIAEELNISESTVKNHVKGALKVLKTK
LGLFAYILFLLK
NT seq 579 nt   +upstreamnt  +downstreamnt
atggttgtttacagtaatctatcggatcaggaattggctggccttttgagaagtcaaagt
gaccagcgggcattcagcgaactttatgtaaggtataaaggcgtgctgcatggctatgcg
tataagaagctgggcaaccttgaagaagcgcgtgatcttattcaggaattgtttagcgcc
ctttggaacaagcgggataccctgcccgacacccataacctatcaggatatttatatacc
actttaagaaaccgcattcttgattttgtggcgcacaggcaggtagagcataaatacctc
aaatctttacaggactttattacagaggcaaatttcattaccgacaggcaggttagggaa
agagaacttacccggcttattgaagatgcagtgaacgagctgccaccaaaaatgcgagaa
gtatttttaatgagcagaaatacaggcaaaagccataaggagatagcagaagaactgaat
atctccgaatctacagtaaaaaatcatgttaaaggagcgcttaaagtacttaaaacaaaa
ttgggcttgtttgcatatatcttgtttttgctgaagtag

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