Porphyromonas gingivalis TDC60: PGTDC60_1451
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Entry
PGTDC60_1451 CDS
T01516
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTDC60_1451 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgt03021
]
PGTDC60_1451 (rho)
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_1451 (rho)
Transcription machinery [BR:
pgt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PGTDC60_1451 (rho)
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PGTDC60_1451 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AT_hook
AAA_25
AAA
Spore_III_AA
AAA_22
OB_RNB
Mor
Mitofilin
Motif
Other DBs
NCBI-ProteinID:
BAK25600
LinkDB
All DBs
Position
1505047..1507023
Genome browser
AA seq
658 aa
AA seq
DB search
MQKYTIVDLNEKAEAELAAIAGELGIANAGSMPKQELIYKILDEQAISVAGVRKEKQKTT
EDRHTERRKPGRPRKNAEEEAPESKDVAAAPAEPNEEEAQAKRKRGRPRKAAEEIAEETR
EDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAETTPRVAPSPPS
TTPVSEPAKDDAKPETPAPPPAIESITTTPAAGAVDEGGARRLVFRHKNSSSVLDQVLPY
SSPQPPQRPKPAGAPVGSSPIRQRQAAGVPTPRREPQQSLYNFDGILECMGVLEIMPDGY
GFLRSSDYNYLSSPDDVYVSQQQIKHNGLKTGDVVAGTIRPPREGEKYFPFVQLRSVNGR
SPEEIRDRVPFDHLTPLFPEEKFTLEAPGIRAVNDKISVRVVDLFAPIGKGQRGLIVSQP
KTGKTMLLKDIANAIAANHPEVYMIVLLIDERPEEVTDMARSVNAEVIASTFDEPAERHV
KIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRF
FGAARNIENGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRRLSNKRIFPAVDI
MSSSTRRDDLLQDETTLNRMWILRKYLSDMNPVEAMEFVRKQLENTHTNMEFLASMSN
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtacacgatcgtcgatttgaacgagaaggctgaagctgaactcgctgctata
gccggcgagctgggtattgccaatgccggctcaatgcccaaacaagaacttatttacaaa
atactcgacgagcaggctatcagtgtagccggcgtccggaaggaaaaacaaaaaacgacg
gaagaccggcacaccgaaaggcgcaagccgggtcgtccgcgcaaaaacgccgaggaggaa
gctcccgaaagcaaagacgtcgcagccgctcctgccgagccgaacgaggaggaagctcag
gccaaacgcaagcgtggccgccctcgcaaagcggcggaagagatagcggaagagacccgg
gaagatgtgcagcagctcgtggctttggctgctgcagaggagacgaatgcaacggagaag
gagagtgccgggcggaagccggcggcgaaaacgtccacagcatcccctgccaaagcccct
gccaaagcccttccccgtccggcggagaccaccccgcgcgtggcaccgtctcccccttcc
acgacgcccgtgagcgagccggccaaggacgatgccaagcccgagacgcccgctcctccc
cccgccatcgagtccatcaccacgactcctgctgccggagccgtcgatgagggcggtgct
cgccgcctcgtattcaggcacaagaacagctcctcggtattggatcaggtgctgccgtac
agctctccccagcccccgcagagacccaaaccggccggtgctccggtcggcagcagcccg
atcaggcagcgacaggcggccggcgtgccgactccccgtcgcgaacctcagcaatctctc
tacaacttcgacggcatcctcgagtgcatgggcgtactggagatcatgcccgacggctac
ggattcctccgctcctcggactacaactatctgtcctctccggacgatgtgtacgtgtcc
cagcagcagatcaagcacaacggactcaagacgggcgacgtcgtggcaggtactatccgt
ccgcccagagagggggagaagtacttccccttcgtgcagctgcggagtgtgaacggtcgc
agccccgaagagatccgcgaccgcgtgcccttcgatcatctcacacccctcttccccgag
gagaagtttaccctcgaagcaccgggcatccgtgccgtaaacgataaaatatccgtccgc
gtcgtagacctcttcgcccccataggcaaaggacagcgcggcctgatcgtatcgcagccc
aagacgggtaagacgatgctcctcaaggacattgccaatgccatcgcagccaatcacccc
gaagtgtacatgatcgtcctgctcatcgacgagcgtcccgaagaggtcaccgacatggcg
cgaagcgtgaacgccgaggtcatcgcttccaccttcgacgagccggcagagcgtcacgtg
aagatcgccgagatcgtcctgaacaaagccaaaagaatggtggagtgcggtcatgacgta
gtcatcctgctcgactccatcacccgtctggcacgtgcatacaataccgtacagcccgct
tcgggcaaggtgctctccggtggtgtcgatgccaatgccctgcagaagccgaaacgcttc
ttcggtgccgctcgtaacatcgaaaacggcggtagtctcaccattctggccacggcgctg
accgacacgggttctaagatggacgaggtgatattcgaagagttcaagggtacgggcaat
atggagctgcagctcgatcgccgcctgtccaacaagcgcatattccccgccgtggacatc
atgtccagcagtacccgccgcgacgacttgctgcaggacgagaccacgctgaaccgtatg
tggatcctgcgcaagtacctctccgacatgaatcctgtcgaagccatggagtttgtgcgt
aagcagctggagaatacgcataccaatatggagttcctcgcctcgatgagcaactga
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