Porphyromonas gingivalis TDC60: PGTDC60_1495
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Entry
PGTDC60_1495 CDS
T01516
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PGTDC60_1495 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_1495 (uvrB)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGTDC60_1495 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PGTDC60_1495 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_16
UvrD-helicase
P-loop_SecA
AAA_5
ASTN1_2_fn3
Motif
Other DBs
NCBI-ProteinID:
BAK25644
LinkDB
All DBs
Position
1548082..1550118
Genome browser
AA seq
678 aa
AA seq
DB search
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV
LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL
RLRATASLLSGRKDVLVVSSVSCLYSMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY
TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE
LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE
NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL
DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE
GDVSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA
RLRDEAARLEKKLEQLTA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggactacaaactcacttctcgattcaagcccacgggcgaccagccggaagccattcgc
caactcgtacagggcatcaacgaagggatgccggctcagacgctgctcggcgtaacgggt
tcgggcaaaacttttacggtggctaacgtggtggcggcggtcaatcgtccgacccttgtc
ctgagtcacaacaagaccttggcagcacagctatacggagagttcaaagccttcttcccc
gagaatgcggtggagtatttcgtcagctactacgactactatcagcccgaggcctacctc
cccgtcacagacacctatatcgaaaaggacatggccatcaatgcggagatcgaaaaactg
cgattgagggccacggcttcgctcctgtcagggcggaaagatgtgcttgtggtcagctcc
gtatcttgtctctacagtatggccaatcctgaagctttttccgaaaaggtgatcagcctg
cacacgggacaaagggcagacagggatcattttatccgcctgctggtagagagctactac
acgaacaataaagtagagttcgagagcggcaacttccgtgtcaaaggcgacagcgtggac
atattccccgccgtagaaggttatgacggcgtggcatacagggtggagttttgggatgga
gaggtcgagcggctgagtaccttcgatccgcgaacgggacgggaatacggcctgctgtcg
gagctgaagatatatccggccaatctcttcgtgacgactaaggagcaggtggatcgggca
gtggggaaaatcgatgtggatctgggcgcacaggtcgattttctgaaagagatcggcaaa
ccatacgaagccaaacgcttgtatgagcgggtcacgtatgacttggaaatgatccgtgag
ttgggttattgttccggtatagagaactattcgcgctacttcgacggccgtgacgcgggc
gaacgtcctttctgcctgttggattatttcccggaggatttcctgttggtcatagacgaa
agccatgtaacgataccgcagatacgtgccatgtacggaggcgatcgttcgcgcaaggag
aatctggtcgaatacggattccgcctgcctgccgctctcgacaatcggccgcttcgcttc
gacgagttcgaagctctcaccccccggaccctttatatcagtgccacgcctgccgactat
gagctgaacagaagcgaaggcgtgatcgtcgagcagctgatccgtccgaccggactgctg
gatcccatcatcgacgtcaagccgacggcaaaccaagtggacgatctgatggaggagata
gcacgctgcatcgaaaagaaagagcgcgtactggtaacgaccctgaccaaacgtatggca
gaggagcttagcgaatacctgctgcgccacggtatcagcaccggctacatacacagcgat
gtggacacgctggagcgtgtgcgtatcatggaagacctgcgcaagggggtctacgatgca
ctcatcggggtgaatctgctccgcgaaggattggacttgccagaagtttcgcttgtggct
attctggatgcggataaggaaggattcctgcgctcgcatcgttcgctcacgcagactgca
ggacgtgctgcccggcacattcatgggcgtgtcatcttctacgcggacaagatcaccgac
agtatgcagctcaccatggacgagactgcacgccggcgcgcaaagcaactggcctataac
gaagcacacggcatcaccccccaacagatagtgaagaacagtgctgccatttggggagaa
ggcgatgtgtcggccttgcaatccggtacagaatccggtgcgtacatagaagagagcagc
atggtggctgccgatcctttggccgactatctgagcaaacccaagctggaagcactcatt
gcttcgaccaagaagcaaatgctggcagcagccaaagagctggactttctggaagcggcg
cgacttcgggacgaagccgcacgattggaaaagaaactggagcaactcacagcctaa
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