Pantherophis guttatus (corn snake): 117668601
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Entry
117668601 CDS
T07329
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03013
Nucleocytoplasmic transport
pgut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117668601 (UPF1)
03015 mRNA surveillance pathway
117668601 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117668601 (UPF1)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117668601 (UPF1)
5.6.2.5 RNA 5'-3' helicase
117668601 (UPF1)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117668601 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117668601 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117668601
NCBI-ProteinID:
XP_034278499
EnsemblRapid:
ENSPGUG00005001300
UniProt:
A0A6P9C7G3
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGVVA
PGTPGLPGGGVGVGAGGPPSVVAPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTFVDYGDEIAIELRSSVGAPV
EVIHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANG
PAAGGMFAGRGNLKGKTGRGGRQKNRFGIPGPSQSNLPNSQASQDVVSQPFSQGPLTQGY
ISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgaactgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcagacgccgcccggcggaggctccgggagcggaggaggcgtcgtcgcg
ccggggaccccgggactcccggggggtggcgtcggagtaggcgcgggggggccgccttcc
gtcgtcgctccggggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggagcagtggatgataatgtgcctaaaaccagccaacttcttgcggagctgaattttgaa
gaagatgaggaagacacttactatactaaggaccttcctgtacatgcctgcagctattgt
ggcatccatgacccagcttgcgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccatcttgtgagagccaagtgcaaa
gaagtgactcttcataaggacggtcctctgggcgagaccgtcttggaatgctacaattgt
ggctgtcgtaatgtgtttcttcttggcttcatcccggccaaagctgactctgtggtcgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattcct
tcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaacaaactcgaa
gaactgtggaaggagaacccatctgccactttggaggacttggaaaagcctggggttgat
gaagagccacagcacgtcctccttagatatgaagatgcttatcaataccagaacatcttt
ggtcctcttgtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcag
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ctgccaaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctgagatac
aaaggggacttggccccactgtggaaaggaattggccatgtgattaaagttcctgatact
tttgtagattatggtgatgaaattgcaattgagttgagaagtagtgtcggtgccccggtg
gaagtgattcacaatttccaagtggattttgtatggaaatcgacatcctttgatagaatg
cagagtgccctaaaaacatttgctgtggatgaaacatcagtttctggctacatctatcac
aagcttctgggtcatgaggtggaagatgttataattaaatgtcagttgccaaagcgcttc
acagcacaaggacttccggatctcaaccattctcaggtgtatgcagtgaagactgttctg
cagcgccccttgagtcttatccaggggccccctggcacaggcaagactgtgacatcagcc
acaattgtgtatcacctggcaagacaaggaaatgggcctgtgctggtttgtgccccaagt
aacattgctgtggatcagctgaccgaaaaaatacatcagacggggctgaaggtggtgcgc
ctgtgtgcaaagagccgtgaggccattgattcacctgtctctttcttagcattacataat
cagatcaggaatatggatagcatgccggagctccagaaactgcagcaactgaaagatgag
actggggaactgtcatccgctgatgagaagcgctaccgagcacttaaacgaacagctgag
cgggaattgctaatgaatgcagatgtcatttgttgcacatgtgtcggagccggcgaccca
agacttgctaaaatgcagtttcgttccattttgatcgatgaaagcacacaggccactgaa
ccagagtgcatggtgcctgttgttcttggggcaaaacagttgatcctggtgggcgatcat
tgccagctcggccctgtcgtaatgtgcaagaaggcagctaaagcaggtctgtcgcagtcc
ctctttgagcgactggtggtgttgggcattcggcccattcgcctgcaagtccagtaccgc
atgcacccagccctgagtgcttttccttccaacatcttttatgaagggtcactccagaat
ggcgtcactgcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagac
aagcccatgtttttctacgtgacccaaggacaagaagaaattgcaagttctggcacttct
tatttgaacagaacagaggcagccaatgtggagaaaataaccacgaagctactgaaggct
ggtgcaaagccagatcagattggtatcatcacaccctatgagggccagcgttcatatttg
gtgcagtacatgcagtttagtgggtctttgcataccaagctttatcaggaagttgaaatc
gctagtgttgatgctttccaagggcgagagaaggacttcattatcctctcctgtgttaga
gccaacgagcatcaaggcattggcttcctgaatgacccccggcgtctcaatgtggctctc
acaagagcaagatatggggtcattattgttgggaatccaaaggcactctccaaacaacct
ctttggaatcaccttctgaactactacaaagagcaaaaggtcttggtggagggaccattg
aacaatctccgtgaaagcctcatgcagtttagcaagcctcgaaaactggtcaacactatc
aatccaggagctcggtttatgacaactgctatgtatgatgcccgtgaagctattatccct
ggatcagtttatgatcgcagcagccaaggccggccctccaacatgtatttccaaacccat
gatcagattgggatgatcagtgctgggcccagtcacgtcactaccatgaacattcctatc
ccattcaacttggtgatgcctcccatgccaccaccagggtactttggacaggccaacgga
ccagctgcaggtgggatgtttgcaggacgtggaaacctgaaaggcaaaactggccgtggt
gggcgacaaaagaatcgttttgggattccaggacccagccagtcgaacctccccaacagc
caggccagccaagatgtggtctcccagcctttctctcagggccccttgactcagggttac
atctccatgagccaaccctcgcagatgagccagcctggcctctcccagccagaattgtca
caggatagttaccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggat
tcaacttaccagggggaacgcgcatatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
