Pantherophis guttatus (corn snake): 117668978
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Entry
117668978 CDS
T07329
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03030
DNA replication
pgut03410
Base excision repair
pgut03420
Nucleotide excision repair
pgut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117668978 (LIG1)
03410 Base excision repair
117668978 (LIG1)
03420 Nucleotide excision repair
117668978 (LIG1)
03430 Mismatch repair
117668978 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgut03032
]
117668978 (LIG1)
03400 DNA repair and recombination proteins [BR:
pgut03400
]
117668978 (LIG1)
Enzymes [BR:
pgut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117668978 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
117668978 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117668978 (LIG1)
DNA replication proteins [BR:
pgut03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117668978 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117668978 (LIG1)
DNA repair and recombination proteins [BR:
pgut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117668978 (LIG1)
NER (nucleotide excision repair)
Other NER factors
117668978 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
117668978 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
117668978
NCBI-ProteinID:
XP_034278939
UniProt:
A0A6P9CGI5
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MQSNIRSFFQPLARVKSEKEKTEDSHLEDVLISQKKFVNGSELCEDFTVNSASKKSPKVL
KSDDEEDSVELDRKDAQADDNKLSPDCVPEPKISEESISPSTSPTTSNSATSVSIPRRKT
ARKQLSKRKPEEDDNSYYSHENRSSKRRKEELDRDDSTDKTNEKPTEVEEVKSENATFVE
HKTDKNAKEKEIPDSSKPSSKSISSFFAPKKSSVKIEKKQAPVVSENMPVPKCLNKVSND
ESNGMADNFLKPSLTLEPAEYNPTKSSYHPVHDACWDPGQKIPYMAVARTLEYIEEESAR
LKIIETLSNLFRSAIVLSPQDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGRQ
LDQIKAEAAEKGDLGVVAENSRTTQGTVFAPPKLSAAAVFGKLQAIGRMAGSSSMNKKID
IIKSLFVACRHSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPDVLDAAK
GKSADARKAWLDERVLIIKQAFCELPNYDIIVPALLEHGVESLPQYCKITPGIPLKPMLA
HPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIVTRV
PKVKNSTVKSCILDAEAVAWDPVSNQILPFQVLTTRKRKDVDAAEIRVQVCIYAFDMLYL
NGMSLVQKPLSQRRTLLHNSFTEVEGQFLFATSMDTSNVDEIAEFLERSIKDSCEGLMIK
TLEVNATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFLLACYDE
ESEEFQSICKIGTGFSDEDLEKLHNSLKDYVIPQPRQYYRWGGTAEPDHWLESQHVWEVK
CADLSISPIHRAASGLVDEEKGISLRFPRFLRIRDDKKPEEATSSVEVAELYRKQQQIQN
QMSLEKDDDFY
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaatataagatcattcttccagcctctggcacgagtaaagtctgaaaaagaa
aaaacagaagacagccacttggaagatgtgcttatttcacaaaagaaatttgtaaatggt
tcagaactctgcgaagacttcacagtgaactctgcatcaaaaaaatcacctaaggtcctt
aagagtgatgatgaagaagattctgtggaattagatagaaaggatgcacaagcagatgac
aacaagttgagccctgactgtgttcctgagccaaaaatctctgaagagagcatctctcca
agtaccagcccaactacctccaattcagccacatctgtcagtatcccaaggcgcaaaact
gcccgcaagcagctctctaaacgtaaaccagaggaagatgacaacagctattattcccat
gaaaatcgcagtagtaaaagacggaaggaagagcttgatagagatgactctacagataaa
accaatgagaaacccacagaagtggaagaagttaaaagtgagaatgcaacatttgtggag
cataaaacagacaaaaatgcaaaggaaaaagaaatcccagattcctctaagccatccagc
aagtcaatttctagtttttttgctcccaagaaaagttcagtgaaaatagaaaagaagcaa
gcacctgtagtatcagaaaacatgccagtaccaaagtgtcttaataaagtcagtaatgat
gagtccaacggcatggctgacaattttctcaaaccatctcttacacttgagcctgcagag
tacaaccctacaaagagcagttatcatcctgttcatgatgcttgctgggaccctggccaa
aagataccatacatggctgtggctcgtactttggaatatattgaggaagaatctgcccgg
ttgaaaattatagagaccctaagcaatctctttcgttctgcaattgttctatctccacaa
gacttgctcccctgtgtctacctctgtctcaatcggttaggcccagcatatgagggccta
gaattaggcattggcaaaaccatcctcatgaaagctctggcccaggccacaggtcggcaa
ctggaccaaatcaaggcagaggcagcagagaagggagatctaggtgtagttgctgaaaac
agtcgcacaacacaaggaacggtgtttgctccacccaaacttagtgctgctgctgtcttt
ggcaaactgcaagcaattggtcgcatggcgggaagctcttctatgaacaagaaaattgac
attatcaaatctttgtttgttgcgtgtcgtcattcagaggctcgttatgtggctcggtca
ctagaaggaaaattacggattgggttagcagagcagtctgtcctttcagctcttgcccag
gcagcatcacttactcctccaggacaaaaatttcccccagatgttttagatgctgcaaag
ggcaaatctgcagatgcacgcaaagcctggctggacgaaagggttttgattattaagcag
gccttctgcgaactaccaaattatgacataatagtacctgcccttttggaacatggtgtg
gagagcttgcctcagtactgcaagatcacgccaggtattcccctgaagcccatgctggct
catccaaccaaaggaattggggaggtattaaaacgctttgaagaagcagccttcacttgt
gaatacaaatatgatggagagcgggcacagatccacattctagagaatggagaagtacat
atttatagccgaaaccaagagaacaacacaacaaagtaccctgatattgtcacccgtgtt
cccaaggtgaaaaacagcactgtgaaatcatgcattttggatgcagaggcagtggcctgg
gaccctgtttcaaaccagatccttccattccaagtattgactacccgcaagcgcaaggat
gtggatgcagcagaaatccgagtgcaagtttgtatatatgcatttgacatgctctacctt
aatggaatgtcattagtccagaagcctctgtctcagcgtcggaccttactgcataattct
ttcactgaagttgaaggccagttcctttttgccacttcaatggatactagtaatgttgat
gagatagcagaatttctggaacgctctatcaaagactcatgcgaagggttaatgataaaa
acactggaagtgaatgccacatatgaaattgcaaagaggtcacataattggctgaagctt
aaaaaagattatctggaaggtgttggtgacacccttgacctggtggtgattggtgcctac
ttgggcaagggcaaacgggcaggcacatatggaggtttccttctagcatgttatgatgag
gaaagtgaagaattccagagcatctgcaaaattggcactggattctcagatgaggactta
gagaaactccataattcactcaaggattacgtgattccacaaccacgacaatactaccgt
tggggtggaacagctgaacctgatcactggttggaatcccagcatgtttgggaagtgaag
tgtgctgatttatccatttctcccatccacagagcagcatcaggtttggtggacgaagaa
aagggcatctccttacgttttcccagattcctgcgcatccgagatgataagaaaccagag
gaggcgactagcagtgttgaggtggctgaactttatcggaagcagcagcagatccaaaat
caaatgtcactggaaaaagatgatgatttctattaa
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