Pectinophora gossypiella (pink bollworm): 126374727
Help
Entry
126374727 CDS
T09293
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126374727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgw03400
]
126374727
Enzymes [BR:
pgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126374727
DNA repair and recombination proteins [BR:
pgw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126374727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT
DNA_ligase_IV
BRCT_2
LIG3_BRCT
MctB
Motif
Other DBs
NCBI-GeneID:
126374727
NCBI-ProteinID:
XP_049877421
EnsemblRapid:
LOC126374727
LinkDB
All DBs
Position
2:12804855..12822957
Genome browser
AA seq
894 aa
AA seq
DB search
MATAEVVPANDVLFSDLCGVLDDLFKRRRQIQVQNIIIADFVNKFKVTVSQIGGKKNSSF
FPILRLLLPDRERERPAYNLKERRLAEMLVKVLAISKTAQDAQSLLNFRSKNSQESDFAG
VAYFVVKNRIGTNPGKWTIGQVNEILDKIATAELGRKWPILDEAFSYALKNMTAEQVKWF
LRIILKDLKLGMGTHRILAAFHPDAPDLFDTFGNLKKVCEDLDDGDTRPLELGIKVFFAV
SPMLSERLDVANVNTQLSRGITYQIEKKFDGERFQIHMENGIFEYFSRKGFKYSDCYGKT
YDSGLLTPLLKNRFAISANSFILDGEMMGWHKQYQCFSSKGMAFDVKKITENSKHQPCFC
AFDILYYNGKALVGPADKNGLPLSKRLEILRSLFDDLPGVIMHSKSTIVCNRSDVLDALN
NAIDDQEEGIVVKDKESYYIPNKRGVGWYKIKPEYTKDTMEDLDLVIIGAEEAQDKRNGW
ARSFHVACADVDTPGAMPSRWVSVGKVASGLSFEERERICAALDKHRTPWKQTPAPPHVV
FNKEKPDFWITPEHSIVLQVRATELIRSTDFGTPYTLRFPRVVAIRDDKPVKDCMTLNCF
NRLVEEKKPVIKLSNKRINQDQIEEIEVKTQRKRKKQELQVAEKFRNKVGDVTVMSGALA
GRKLCVLSGDEHSNKPDLVRIIEEHGGKHVENTGLDTWCCVVGNLNYRARSLIQSQELDI
VTTSWLRNIKPSDTPCDLSPLDMLSIKKSTRQALSRVYDTFWDSYTKEIDEETLKKCFEK
MEKEEPHIYLTNEEMLNLDKELYGDHNPFSYLRPCFIHFVDKDTLLELKAKMYGANVHEI
DSPYLTHIVISKVDNIEEVKEQKKNTNAVVVSDDWLRACFTEETLVSAAEYLIT
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctgaggtggtaccagccaatgatgttctattttctgatttatgcggtgtc
ctagacgacttatttaaaagaagaagacaaattcaagtgcaaaacataataatagccgat
tttgtaaataaattcaaagtaactgtttcccaaataggagggaaaaagaactccagtttc
tttccaatattaagactgctgttgccagatagagaaagggagagacccgcttacaatttg
aaagagcggaggcttgcagaaatgctggtaaaggttttggctatcagtaaaacagcacaa
gatgcgcaaagtttgttaaacttccgatcaaaaaactctcaagagagtgattttgcaggg
gtagcatattttgtggtcaaaaacaggattggcacaaatccgggcaagtggactattggg
caggttaatgagattctagataagatagccacagccgaattaggacgtaaatggcctata
ttagacgaagcgttcagctacgctctgaagaatatgactgcggagcaagttaaatggttt
ttgcgaatcatccttaaagatttgaaacttggaatggggactcaccgcatactggctgca
ttccacccggacgctcctgacctcttcgacacttttgggaatctgaaaaaggtatgtgaa
gatttagatgacggcgatacccgccctctagagttgggcattaaggtgttcttcgccgta
agtcccatgctctccgagcggctcgatgtcgccaacgtgaacacccaactgtcgcggggt
attacctaccagatagaaaagaagtttgacggcgaaaggtttcagattcacatggaaaac
ggaatcttcgagtatttttcaagaaaaggttttaagtattcggattgttacggaaagacc
tacgattcgggccttttgacacctttactcaagaatcgttttgctatcagtgccaacagt
tttatacttgatggagaaatgatgggatggcataaacagtaccagtgttttagttcaaaa
ggcatggctttcgatgtgaaaaaaatcactgaaaattctaaacatcaaccgtgtttctgt
gcgtttgacatactctattataatgggaaggcgcttgtcgggcccgcagacaagaatggt
ttgccactcagcaaaagactggagatccttcgatcgctgtttgatgatctaccgggagtg
ataatgcacagcaaaagtacgatcgtttgtaatagatcagacgtactggatgcccttaac
aacgccatagatgaccaggaagaaggaatagtggtcaaagacaaagagtcttattacatc
ccgaacaaacggggcgttggatggtataaaattaaacctgagtacacgaaagatacaatg
gaggacttggacctggtgatcatcggcgcggaggaggcgcaggacaagcgtaatggctgg
gcgcgcagcttccacgtcgcttgcgccgacgtcgacacgccgggagctatgccaagccgg
tgggtaagcgtgggtaaagtggcgtctgggctcagcttcgaagagcgggagaggatatgt
gcggcgttggacaagcaccgcacgccttggaagcagacacccgccccgccacatgtagtg
ttcaataaggagaaacccgacttttggatcacacctgaacattccatagtactacaggtc
cgtgcaacagagttgatccgtagcacggatttcggcactccatacacgctgcggttcccg
cgcgtcgtggccatccgcgacgacaagcccgtcaaggattgtatgacgctcaattgtttc
aatcggttggttgaggaaaaaaaaccagtgataaaattgagcaacaagcgcataaatcaa
gaccaaatcgaagagatcgaagttaaaactcaaaggaaacggaagaaacaggagttgcaa
gtcgcagaaaagttccgtaataaagtcggtgacgtgacggtgatgtcgggagctctcgct
ggtagaaaactgtgcgtgttgtccggtgacgagcactcgaacaaaccagacttggtacgg
atcatagaggagcacggtgggaaacacgtggaaaacacaggattggatacctggtgctgc
gtcgtcggcaacttgaactaccgcgcgcggtcgctcatacagtcccaagagctggacatc
gtcactacaagttggttgcgaaacatcaaaccctccgacacaccatgtgatctgtccccg
ttggacatgctctcaattaagaaatccacccgacaggctctaagccgagtgtatgacacg
ttttgggacagttacacgaaggaaattgatgaggaaactctgaagaaatgttttgagaaa
atggaaaaagaggagccacatatatatctcacgaatgaggagatgttgaatttagacaag
gagttatacggcgatcacaacccattctcctatctacgcccttgcttcatacattttgtt
gacaaagacaccttgttagagcttaaagcaaaaatgtatggagccaacgtgcatgaaata
gattcgccttatttgactcacattgttataagtaaagtggacaacattgaagaagtaaag
gagcagaagaaaaatacgaatgctgtggttgtctccgacgattggttgagagcttgtttc
actgaagaaacacttgtttctgcagctgagtacttaatcacgtaa
DBGET
integrated database retrieval system
